Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31 109 2e-18 >seq31 Length=1065932 Score = 109 bits (120), Expect = 2e-18 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 303607 TCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCA 303666 |||| || || ||| || ||| || | ||| | |||||| |||||||||||||||||| Sbjct 885198 TCAGCCTTTGTTTCGACAGATTGAGGTAAATGAAGATTCATTTCATCACCGTCAAAATCA 885139 Query 303667 GCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACA 303726 || || ||||| ||| | | | |||| || || || | ||| || || || Sbjct 885138 GCGTTGTACGGTGAAGTGACAGACAAATTCAGACGAAATGT-TGACCATGG--CAAGACG 885082 Query 303727 CGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACG 303786 || || | |||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct 885081 CGCACTCTGTGACACATCATAGACATTTTGTGTAGGGTGGGCTGACGATTGAAAACAACA 885022 Query 303787 GGGTCACCGTTTAATACATGACGATGAAC 303815 |||| |||| | | ||| || | ||| Sbjct 885021 AAGTCATCGTTCAGCATATGGCGCTCAAC 884993 Score = 105 bits (116), Expect = 2e-17 Identities = 196/285 (69%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || ||||||| |||||| ||| || | ||||||||| || ||||| ||| | ||| Sbjct 886276 AACCATAATGGATTCCATGGCCTTCATCAGACGACGCTGGATGTAACCGGTTTCGGCTGT 886217 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 || || ||||||||||| | ||| ||||||||||||| || |||||||| | ||| Sbjct 886216 CTTAACGGCTGTATCAATCAAACCCTCACGACCACCCATTGCGTGGAAGAAAAACTCGGT 886157 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | ||||| |||||||||| || | | |||||| | ||| Sbjct 886156 TGGTGTAAGACCGGCTAGGTAGGAGTTCTCAACGAAGCCTCTTGACTCGGGACCGTAGTC 886097 Query 302742 GAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||| | || || || || || | || | | ||| |||| | || || || | Sbjct 886096 G-TCTTGAATGAAATGGGGAAGAGTACGGTGCCTGAAACCGAATGGCACGCGTTTACCCT 886038 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 |||| |||||||| || | || | || | ||| || || |||| Sbjct 886037 CAACATTCTGCTGCCCGACACAGGCGATTACCTGAGAGATGTTTA 885993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471749222113962