Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-20 seq1628 113 6e-19 seq822 113 6e-19 seq371 113 6e-19 seq197 113 6e-19 seq406 105 8e-17 seq511 104 3e-16 seq387 104 3e-16 seq353 104 3e-16 seq123 98.7 1e-14 seq107 98.7 1e-14 seq44 86.0 8e-11 >seq10 Length=2030774 Score = 118 bits (130), Expect = 1e-20 Identities = 198/282 (70%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || |||||||||| ||||| ||||||| |||||| |||||||| || |||||| Sbjct 443181 CCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 443240 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||| |||||| | || || || || || || || | |||||| | || || | Sbjct 443241 TTGAGCCAGAAGATG--GAAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGA 443298 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGC 869355 | | | || ||||| || || || ||| | | ||| |||||| | | || Sbjct 443299 ACGCCACCAGACGCTCCGC----GT-ACGGTGCCTTTTTATTTGCAATCCACCTAAGAGC 443353 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 ||| |||||||| || || |||||| ||| | |||||| ||| || ||| Sbjct 443354 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 443413 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||| |||| ||||| || ||||| || ||||| || || || Sbjct 443414 TTCTACCGGATCCTTTACGTAGGTATCAATCAGAAGAGAGTA 443455 >seq1628 Length=5716 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 833 CAGACGCACTGCAGTCTGAATCTCTCGACTCGTGATAGTCGACTT---CTTGTTGTAGTG 889 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 890 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 949 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 950 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 1009 Query 1254545 GATG 1254548 |||| Sbjct 1010 GATG 1013 >seq822 Length=24677 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 16498 CAGACGCACTGCAGTCTGAATCTCTCGACTCGTGATAGTCGACTT---CTTGTTGTAGTG 16442 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 16441 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 16382 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 16381 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 16322 Query 1254545 GATG 1254548 |||| Sbjct 16321 GATG 16318 >seq371 Length=72635 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 14205 CAGACGCACTGCAGTCTGAATCTCTCGACTCGTGATAGTCGACTT---CTTGTTGTAGTG 14149 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 14148 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 14089 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 14088 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 14029 Query 1254545 GATG 1254548 |||| Sbjct 14028 GATG 14025 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 46544 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 46600 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 46601 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 46660 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 46661 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 46720 Query 1254545 GATG 1254548 |||| Sbjct 46721 GATG 46724 >seq197 Length=134788 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 759 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 703 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 702 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 643 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 642 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 583 Query 1254545 GATG 1254548 |||| Sbjct 582 GATG 579 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 15061 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 15117 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 15118 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 15177 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| ||||||||||| Sbjct 15178 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGTA 15237 Query 1254545 GATG 1254548 |||| Sbjct 15238 GATG 15241 >seq406 Length=65694 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | ||| |||||||| ||||| ||||| | | || Sbjct 64870 GCTTGGCCAACTCACCCGGCAGCAGCAGACGCACGGCAGTCTGAATCTCCCTACTCGTGA 64811 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||| | ||||||| |||| | ||||| | | ||||| |||| | Sbjct 64810 TCGTCGACTTCTTGTTGTAATGCGCCAACCGGCTCGACTCGGCGGCAATGCGTTCGAAGA 64751 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| | |||||||| ||| |||||||| ||| || | Sbjct 64750 TGTCGTTCACGAAGGAGTTCATTATCGACATCGCCTTCGACGAGATGCCTGTGTCCGGAT 64691 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| | ||||||||||||| Sbjct 64690 GCACCTGACGCAACACCTTGTAGATG 64665 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| | || Sbjct 61258 CAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 61202 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | ||||| |||| |||||||| || || |||||||| Sbjct 61201 CGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 61142 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| ||||||||| ||| || |||||||| ||||||||||| Sbjct 61141 TATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGTA 61082 Query 1254545 GATG 1254548 |||| Sbjct 61081 GATG 61078 Score = 89.7 bits (98), Expect = 6e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||| | | ||||| |||| |||||||| || || |||||||| | |||||||| ||| Sbjct 64390 CTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATTATCGACATCGCCTT 64331 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||| ||| || |||||||| ||||||||||||||| Sbjct 64330 CGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGTAGATG 64282 >seq511 Length=51389 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| | || Sbjct 30003 CAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 29947 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | ||||| |||| |||||||| || || |||||||| Sbjct 29946 CGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 29887 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| ||||||||| ||| || |||||||| ||||||||||| Sbjct 29886 TATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGTA 29827 Query 1254545 GATG 1254548 |||| Sbjct 29826 GATG 29823 >seq387 Length=69685 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| | || Sbjct 4878 CAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 4822 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | ||||| |||| |||||||| || || |||||||| Sbjct 4821 CGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 4762 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| ||||||||| ||| || |||||||| ||||||||||| Sbjct 4761 TATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGTA 4702 Query 1254545 GATG 1254548 |||| Sbjct 4701 GATG 4698 >seq353 Length=77991 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| | || Sbjct 40986 CAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 41042 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | ||||| |||| |||||||| || || |||||||| Sbjct 41043 CGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 41102 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| ||||||||| ||| || |||||||| ||||||||||| Sbjct 41103 TATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGTA 41162 Query 1254545 GATG 1254548 |||| Sbjct 41163 GATG 41166 >seq123 Length=229434 Score = 98.7 bits (108), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404 |||| || ||| ||| | ||| ||||| || ||||||||||| | |||| || Sbjct 190247 GCCAACTCACCGGGCAGCAGCAGACGCACAGCAGTCTGGATCTCTCTACTCGTGATTGTC 190188 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 | || |||||| | ||||||| ||||| | |||| | | || || |||| ||| Sbjct 190187 GATTT---CTTGTTGTAATGCGCCAAACGGCTCGATTCGGCGGCAATCCGCTCGAAGATG 190131 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 || || || || |||||||||| |||||||| ||| ||||||||| ||| |||||| Sbjct 190130 TCATTCACGAAGGAGTTCATGATCGACATCGCCTTCGATGAGATGCCCGTGTCTGGGTGC 190071 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 || || | ||| ||||||||| Sbjct 190070 ACTTGACGCAACACTTTGTAGATG 190047 >seq107 Length=272272 Score = 98.7 bits (108), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| | || Sbjct 200095 CAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 200039 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| |||| | ||||| | |||| || |||| |||||||| || || |||||||| Sbjct 200038 CGCCAACCGGCTCGACTCGGCGGCGATCCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 199979 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||||| ||| ||||||||| ||| || |||||||| | ||||||||| Sbjct 199978 TATTGACATCGCCTTCGACGAGATGCCCGTGTCCGGATGCACCTGACGCAACACCTTGTA 199919 Query 1254545 GATG 1254548 |||| Sbjct 199918 GATG 199915 >seq44 Length=837233 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 92600 CTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGA 92658 |||||| |||||||| || || ||| ||||| || | || ||| || |||| || | Sbjct 215909 CTCGGCAATCTGGCGTGTCAGACGCTCTTGCACTTGCAGACG-TCGCGAGAACACCTCCA 215967 Query 92659 CGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGG 92718 | || | || |||||| |||| || || | ||| || |||| ||||||||||| | Sbjct 215968 CAATCCTCGCGATCTTACTCAAACCAATCACCCTTCCATTGGGTAGGTAGCCCAC-CGAT 216026 Query 92719 CCTTG-CCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGC 92777 || | ||||| || || | || ||||||||| ||||| || || | |||| ||| || Sbjct 216027 ACTCGTCCCATGAACGGGATCATATGGTGCTCACACATAGAAAACATCTCGATGTCCCGT 216086 Query 92778 ACGATCACCA 92787 || | ||||| Sbjct 216087 ACAACCACCA 216096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106841633459442