Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq32 149 6e-31 seq12 123 2e-23 >seq32 Length=1043406 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| | ||||| |||||||| || || |||||||| || || ||| || Sbjct 737647 ACGATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCC 737706 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| | || | || || ||||| |||||||| || || || || || || Sbjct 737707 AGCGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGAC 737766 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || |||||| | |||||||| ||||| ||| |||| ||| | | | |||| || ||| Sbjct 737767 CAGCAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTAT 737826 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || ||| | ||| | ||| | || || || Sbjct 737827 AACATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGG 737876 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| || || || ||||||||||| ||||| ||| | | | Sbjct 738790 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 738849 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || || || || || || || || ||||| Sbjct 738850 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 738909 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||| |||||||| | | | | ||||| || ||| Sbjct 738910 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 738969 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || ||| | ||| | || |||| || || Sbjct 738970 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGG 739016 Score = 122 bits (134), Expect = 8e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 731551 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731492 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || ||||| Sbjct 731491 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 731432 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || |||||||||||||| || |||||| ||||||| ||| || | | || || || | Sbjct 731431 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCG-GACTC-TTTCCGACTACA 731374 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||||| || || || ||| | ||| | || |||| || ||| Sbjct 731373 ACATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 731324 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||||||| || || || ||||| ||||| ||| ||| Sbjct 738106 ATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 738165 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || ||||| || || || || || Sbjct 738166 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 738225 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || || |||| ||| | | | || || || ||| Sbjct 738226 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAAC 738285 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| || || || || | ||| | ||| | || || ||| Sbjct 738286 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGC 738333 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || |||||||| || || || ||||| ||||| ||| ||| Sbjct 737877 GATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 737936 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | ||||| ||||||||||| || || || || || || || || Sbjct 737937 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCA 737996 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || || |||| ||| | | | || || || || Sbjct 737997 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAA 738056 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||| || || || || | ||| | ||| | || || ||| Sbjct 738057 CATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGC 738105 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||||||| || || || ||||| ||||| ||| ||| Sbjct 738334 ATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 738393 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || || || || || || |||||| Sbjct 738394 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGCCAGATCAA 738453 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || || ||| |||| || | | | || ||||| ||| Sbjct 738454 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 738513 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | ||| | ||| | || || || Sbjct 738514 ATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGG 738560 Score = 116 bits (128), Expect = 3e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || ||||| || || | | Sbjct 739018 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739077 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || ||||| Sbjct 739078 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 739137 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || |||||||||||||| || |||||| ||||||| ||| || | | || || || | Sbjct 739138 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCG-GACTC-TTTCCGACTACA 739195 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||||| || || || ||| | ||| | || |||| || ||| Sbjct 739196 ACATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 739245 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| ||||| || || || || || || ||| Sbjct 749014 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 749073 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||| ||||| || || || ||||| || || Sbjct 749074 GACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 749133 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||| |||| ||| | | | | || || || ||| Sbjct 749134 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAAC 749193 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 || |||||||| || || || ||| | ||| | || | || |||||| || Sbjct 749194 ATCCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGAGGCTGA 749244 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || ||||| || || | | Sbjct 739474 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739533 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || || ||| Sbjct 739534 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAA 739593 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 ||||| |||||||| || || || ||| |||| ||| ||| ||| |||| || || Sbjct 739594 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCG---CACATTGTCCGACTAC 739650 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| ||||||||||| || ||| | ||| Sbjct 739651 AACATTCAGAAGGAATCGACCCTTCACCTTGTG 739683 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||| || || || || |||||| | || || || | | Sbjct 731323 ATGCAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAGT 731264 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 731263 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 731204 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 731203 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 731144 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || ||||| || ||||||||| Sbjct 731143 ATCCAGAAAGAGTCGACGCTTCACTTGGTG 731114 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||| || || || || |||||| | || || || | | Sbjct 739246 ATGCAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAGT 739305 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 739306 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 739365 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 739366 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 739425 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || ||||| || ||||||||| Sbjct 739426 ATCCAGAAAGAGTCGACGCTTCACTTGGTG 739455 Score = 105 bits (116), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || ||||| || || | | Sbjct 731095 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731036 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||||||| ||||| || || || || || || ||| Sbjct 731035 GATTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 730976 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || || ||| |||| ||| ||| |||| ||| || || Sbjct 730975 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGC---ACATTGTCCGACTAC 730919 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||||||||| || ||| | ||| Sbjct 730918 AACATCCAGAAGGAATCGACCCTTCACCTTGTG 730886 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || || || || || || ||| Sbjct 748557 GATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAG 748616 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | |||| | || || |||||| || ||||| || || || || || ||||| Sbjct 748617 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 748676 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| |||||||||| || || ||| |||| ||| | | | |||| || || || Sbjct 748677 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 748736 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| ||||||||||| || || || |||| Sbjct 748737 CATCCAAAAGGAATCCACTCTTCATCTTG 748765 >seq12 Length=1725783 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || || || || || | | Sbjct 1076823 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 1076882 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | |||||| ||| |||||||||||||| |||||||| || |||||| Sbjct 1076883 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 1076942 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || ||| ||||||| | | | | || || ||||| Sbjct 1076943 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAAT 1077002 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| |||||||| || |||| Sbjct 1077003 ATTCAAAAGGAGTCGACACTCCATCTTG 1077030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449877208391280