Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq32 150 4e-31 seq12 138 2e-27 seq3 120 6e-22 >seq32 Length=1043406 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || |||||||| ||| | | ||||||||| | || Sbjct 738536 TGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGC 738477 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || | | ||||||||||| || || || ||||||||||| ||||| Sbjct 738476 TTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTTC 738417 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || ||||||| |||| | ||||| ||||| | ||||| |||||||| || Sbjct 738416 GCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTT 738357 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 738356 AGAGTCTTGACAAAGATCTGCAT 738334 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||||||||| || ||||| || || || |||||||| || || || |||||| Sbjct 738788 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 738729 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || | || ||||| || ||||| | || ||| || ||||| || Sbjct 738728 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 738669 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || |||| ||| | || || || Sbjct 738668 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACC 738609 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | || || |||||||||||||| Sbjct 738608 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || || || ||| | | || ||||| | ||| Sbjct 738308 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGC 738249 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || || ||||| || || |||||||||||||| ||||| Sbjct 738248 TTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTC 738189 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || ||||||| |||| | ||||| ||||| | ||||| |||||||| || Sbjct 738188 GCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTT 738129 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 738128 AGAGTCTTGACAAAGATCTGCAT 738106 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || |||| ||| || || || || || || || || || || || Sbjct 731325 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 731384 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||| || | ||||| ||||||||||| | | || ||||| || || Sbjct 731385 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 731444 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||||| || || ||||| ||||||| |||| |||| || || Sbjct 731445 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 731504 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || || ||||| || || | |||||| ||||| || ||||| || Sbjct 731505 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGAT 731554 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || |||| ||| || || || || || || || || || || || Sbjct 739244 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 739185 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||| || | ||||| ||||||||||| | | || ||||| || || Sbjct 739184 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 739125 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||||| || || ||||| ||||||| |||| |||| || || Sbjct 739124 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 739065 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | |||||||| || |||||||| Sbjct 739064 TCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || || || ||| | | || ||||| | ||| Sbjct 738080 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGC 738021 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || || ||||| || || || ||||||||||| ||||| Sbjct 738020 TTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTC 737961 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || ||||||| ||| | ||||| ||||| | ||||| |||||||| || Sbjct 737960 GCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTT 737901 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 737900 AGAGTCTTGACAAAAATCTGCAT 737878 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||||| ||||| || || || || || | | | ||| Sbjct 739689 ACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACC 739630 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||| ||||| | || |||||| ||||| || || || || || Sbjct 739629 ATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTT 739570 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||| ||||||| |||| |||| || || || | || || Sbjct 739569 GTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGAT 739510 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | |||||||| || |||||||| Sbjct 739509 AGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| ||||| || || || || || ||||| | | | ||| Sbjct 748773 ACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACC 748714 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || ||||| |||||||| || | ||| |||||||| || || || ||||| Sbjct 748713 ATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTT 748654 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||||||||| || ||||| || |||| ||| | || || || |||| || || Sbjct 748653 GTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGAT 748594 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| || || || ||||| Sbjct 748593 TGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || |||||||| || || || || | Sbjct 731095 TACCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGG 731154 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || | || ||||| |||||||| | || ||| || || || | Sbjct 731155 ACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTG 731214 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || |||| ||| | || || | Sbjct 731215 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCA 731274 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || |||| |||||| |||||||||||||| Sbjct 731275 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || |||||||| || || || || | Sbjct 739474 TACCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGG 739415 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || | || ||||| |||||||| | || ||| || || || | Sbjct 739414 ACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTG 739355 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || |||| ||| | || || | Sbjct 739354 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCA 739295 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || |||| |||||| |||||||||||||| Sbjct 739294 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || || || || ||||| ||||| || | | ||| Sbjct 737864 CGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCA 737805 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || ||||||||||| | ||| || || || || || || ||||| Sbjct 737804 TCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTG 737745 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || ||||| ||||| || || | ||||| || |||| || || Sbjct 737744 TCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATT 737685 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | || || ||||| || ||||| Sbjct 737684 GTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 >seq12 Length=1725783 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || || || || || |||||||| || || ||| | | ||||| Sbjct 1077034 AGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCC 1076975 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || || || || ||||| || | |||||||||||| |||||||| || || ||| Sbjct 1076974 TCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCT 1076915 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || ||||||||||| || ||||| | |||| | || || || || | ||||| || Sbjct 1076914 TGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTT 1076855 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || || | ||||| ||||| || ||||||||| Sbjct 1076854 TTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATT 1076819 >seq3 Length=2943993 Score = 120 bits (132), Expect = 6e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATA--GAATTCTAC 82653 || || || | ||| || || || || ||||| ||||| |||||||||| ||| | | Sbjct 307567 CGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAA--CGTC 307624 Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713 | || || | ||| || |||||||| || || | ||||| ||||| || || || |||| Sbjct 307625 CATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCT 307684 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 | ||||||||||| || || ||||| ||||| | ||| || || || || | ||| | Sbjct 307685 TGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGA 307744 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || | || || ||||| |||||||| Sbjct 307745 TAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981781586149214