Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq32 122 8e-23 seq10 116 4e-21 seq3 109 5e-19 >seq32 Length=1043406 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || | ||| | | | || || | |||||||| Sbjct 749211 GGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCA-TCTTCCAACTGCTTGC 749153 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| ||||| ||||| |||||||| ||||||| || Sbjct 749152 CAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCT 749093 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || ||| |||||||||| || | |||| ||||||||||| |||| Sbjct 749092 TCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAG 749033 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 749032 TCTTCACGAAGATCTGCAT 749014 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| | | || | | |||| ||||| | |||||| | Sbjct 738758 GTCGACTCTTTCTGAATGTTGTAGT--CAGATAGAGTACGACCATCCTCCAACTGCTTTC 738701 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| || || ||||| |||||||| |||||| || Sbjct 738700 CTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCT 738641 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || ||| |||||||||| || | ||||| ||| |||||||| || | Sbjct 738640 TCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGG 738581 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 738580 TTTTAACAAATATCTGCAT 738562 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || |||| ||| | ||||| | |||||| || Sbjct 731127 GTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCA-TCCTCCAACTGCTTTCC 731185 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| || |||||||| |||||||| |||||| ||| Sbjct 731186 TGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 731245 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || ||| | |||||||| || | || | || || || ||||| || Sbjct 731246 CACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGT 731305 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 731306 CTTCACAAATATCTGCATG 731324 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || |||| ||| | ||||| | |||||| || Sbjct 739442 GTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCA-TCCTCCAACTGCTTTCC 739384 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| || |||||||| |||||||| |||||| ||| Sbjct 739383 TGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 739324 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || ||| | |||||||| || | || | || || || ||||| || Sbjct 739323 CACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGT 739264 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 739263 CTTCACAAATATCTGCATG 739245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| ||| | ||| | | | || || | ||||| || Sbjct 738074 GTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA-TCTTCCAATTGCTTACC 738016 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||| ||||| || |||||| ||| Sbjct 738015 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTT 737956 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| |||| || || || | || | ||| |||||||| ||||| Sbjct 737955 TACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGT 737896 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 737895 CTTGACAAAAATCTGCAT 737878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| ||| | ||| | | | || || | ||||| || Sbjct 738302 GTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA-TCTTCCAATTGCTTACC 738244 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||||||||| || |||||| ||| Sbjct 738243 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTT 738184 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| || || || | || | ||| |||||||| ||||| Sbjct 738183 TACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGT 738124 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 738123 CTTGACAAAGATCTGCATG 738105 >seq10 Length=2030774 Score = 116 bits (128), Expect = 4e-21 Identities = 184/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| ||||| |||||||| ||||| || || || ||||||||||| ||||| || Sbjct 443157 AGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTG 443216 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||||| || | |||||| |||| |||| ||||| || |||||| Sbjct 443217 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAG 443276 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || |||||||| | || || || |||| ||||| || ||| ||| | || | Sbjct 443277 AATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTT 443336 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAA-CGC 120878 | |||||| | | ||||| |||||||| || || ||||||| || | ||| || Sbjct 443337 GCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCA-ACGTTTGAATGGC 443395 Query 120879 GTTCAGCAGCATGTCGCGCTC 120899 ||| | ||| | |||||| || Sbjct 443396 GTTAAACAGAAAGTCGCGTTC 443416 >seq3 Length=2943993 Score = 109 bits (120), Expect = 5e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| ||||||||||| || | ||| ||||| | |||||| Sbjct 307584 GGTTGACTCCTTCTGAATATTGTAATCAG--ATAAGGAACGTCCATCCTCCAATTGCTTG 307641 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || |||| || ||||| ||||| || || || || |||||||| ||||| | Sbjct 307642 CCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC 307701 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| | |||| |||||| || || | |||| ||||||||||| ||| Sbjct 307702 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 307761 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| || |||||||||||| Sbjct 307762 GTTTTCACAAAAATCTGCATG 307782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398888952240