Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq32 104 6e-17 seq12 96.9 8e-15 seq3 84.2 5e-11 >seq32 Length=1043406 Score = 104 bits (114), Expect = 6e-17 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 731320 CAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAGT--- 731264 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||| | | || || ||| ||||| || || || || || || |||||| Sbjct 731263 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 731204 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| || | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| Sbjct 731203 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 731144 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| || |||||| Sbjct 731143 ATCCAGAAAGAGTCGACGCTTCAC 731120 Score = 104 bits (114), Expect = 6e-17 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 739249 CAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAGT--- 739305 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||| | | || || ||| ||||| || || || || || || |||||| Sbjct 739306 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 739365 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| || | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| Sbjct 739366 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 739425 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| || |||||| Sbjct 739426 ATCCAGAAAGAGTCGACGCTTCAC 739449 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| || || || ||||| ||||| ||||| |||| Sbjct 738565 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGAC 738624 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || ||| || ||| ||| Sbjct 738625 TCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAGCAA 738684 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| |||||||||||||| ||||| | ||| | | || |||||| | Sbjct 738685 CGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAACATT 738744 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 738745 CAGAAAGAGTCGACGCTTCAC 738765 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| || || || ||| ||| || | |||||||| || ||| Sbjct 739558 AAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAACAACGATTGATCTTCGCTGGCAAG 739617 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || ||| |||| |||||| | ||||| || || || |||||| Sbjct 739618 CAGTTGGAAGATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCGACCCTTCAC 739677 Query 206374 CTTGT 206378 ||||| Sbjct 739678 CTTGT 739682 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || || || ||| ||| || | |||||| Sbjct 731020 GTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAACAACGATTGATCTTC 730961 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || ||| |||| |||||| ||||||| || || Sbjct 730960 GCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACATCCAGAAGGAATCG 730901 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 730900 ACCCTTCACCTTGT 730887 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || |||| |||||| |||||| | || Sbjct 737665 AAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGACACAATTGAGAAT 737724 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| |||||| ||| | || ||||| Sbjct 737725 GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAACGTCTAATCTTT 737784 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || | || || ||| | || || ||||| Sbjct 737785 GCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATTCAAAAGGAGTCA 737844 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||||||| Sbjct 737845 ACCCTCCACCTTGTGCTCCGACTTCG 737870 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| |||| ||||| |||| | | || || ||| | Sbjct 748582 ACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGTGACTCGATAGAGAATGTGAAGGCA 748641 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || || ||| | || ||||| || |||||| Sbjct 748642 AAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGCAACGCCTGATCTTTGCGGGAAAG 748701 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || ||| | || |||||| |||| || || || |||||||| Sbjct 748702 CAGTTGGAAGATGGTCGCACCTTGTCTGACTACAACATCCAAAAGGAATCCACTCTTCAT 748761 Query 206374 CTTGT 206378 ||||| Sbjct 748762 CTTGT 748766 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||| ||||| |||| | | || Sbjct 749029 AAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGTGACTCGATTGAGAAC 749088 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| || ||| ||| || | |||||| Sbjct 749089 GTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAACGATTGATCTTC 749148 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || | | || |||||| |||| || ||||| Sbjct 749149 GCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAACATCCAAAAGGAGTCC 749208 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 749209 ACCCTTCACCTTGT 749222 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || || || ||||||||||| | |||||| | || Sbjct 738805 AAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGCGACACAATTGAGAAT 738864 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| ||| || || | | |||||| Sbjct 738865 GTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAGCAGCGTTTGATCTTC 738924 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| ||||| | || | | || |||||| | ||||| || || Sbjct 738925 GCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAACATTCAGAAGGAATCG 738984 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 738985 ACCCTTCACCTTGT 738998 >seq12 Length=1725783 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||| | |||||| || || || ||||| || || | ||||||||| | | ||| Sbjct 1077044 TCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGT 1076985 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || || |||| |||||| |||||||||||||||||||||||| Sbjct 1076984 CCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 1076939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| || ||||| ||||| ||||| || || ||| | ||||||||||| Sbjct 1076901 AAAGCAAAA-ATCCAAGACAAAGAGGGAATACCACCAGATCAACAACGGCTTATCTTCGC 1076959 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| ||||||||||| || || ||||| | |||| || || | || || ||||| || Sbjct 1076960 CGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAATATTCAAAAGGAGTCGAC 1077019 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 || || |||||| | ||||| ||| Sbjct 1077020 ACTCCATCTTGTTCTAAGACTACGA 1077044 >seq3 Length=2943993 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| |||||| | || || || || || Sbjct 307778 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 307719 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||||||||| || || || ||| || ||| || Sbjct 307718 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 307659 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||| ||||| |||||| | | || | |||||||| | Sbjct 307658 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 307599 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 307598 CAGAAGGAGTCAACCCTTCACCTTGT 307573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181765894821546