Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq32 87.8 2e-12 seq12 84.2 2e-11 seq17 82.4 7e-11 >seq32 Length=1043406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||||||||| ||||| || ||| || |||||| | ||| || || | Sbjct 737845 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 737786 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||||||||| || || || || || ||||| || || || ||| || |||| Sbjct 737785 CAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCA 737726 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || ||| | || ||||| || | ||| | || || || || ||||||| Sbjct 737725 CATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTT 737666 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||| ||||| Sbjct 737665 TCACAAAAATTTGCAT 737650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||||||||||||| | || || |||||| | || ||||| | Sbjct 738073 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAG 738014 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | |||||| || ||||| || ||||| || ||||| || || || | Sbjct 738013 CAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTA 737954 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | |||| | || || ||||| | ||| | || || || || ||||| | Sbjct 737953 CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCT 737894 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||||||||| Sbjct 737893 TGACAAAAATCTGCAT 737878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||||||||||||| | || || || || | |||||| || | Sbjct 739213 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAG 739154 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | |||||| ||||| || || || || ||||| || ||| || |||| Sbjct 739153 CAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCA 739094 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | ||| | ||||| || |||| || | || || || || ||||| | Sbjct 739093 CATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCT 739034 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||| |||||||| Sbjct 739033 TTACGAAGATCTGCAT 739018 >seq12 Length=1725783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| || |||||| | || ||| || || | ||| ||||||| Sbjct 1077016 GACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCG 1076957 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || ||||||||||| ||||| || ||||| || |||||| ||| | Sbjct 1076956 AAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACG 1076897 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||||| ||||| ||||| || Sbjct 1076896 TTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTA 1076837 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 1076836 ACAAAAATTTGCAT 1076823 >seq17 Length=1461088 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 51738 ACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCG 51797 || || || | ||| || || || ||| || || | ||||| ||||||| ||||| Sbjct 1120856 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 1120915 Query 51798 GTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 51857 ||| || ||||| |||| ||||| |||||||| | | ||||| ||||||||||| Sbjct 1120916 TGGGGATTAAAGTGGGCGCCAGCCGAAGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 1120975 Query 51858 ACGTGGAATCCGTGC 51872 ||||| || |||||| Sbjct 1120976 ACGTGAAAGCCGTGC 1120990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589597597360