Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq32 140 3e-28 seq40 91.5 1e-13 seq3 89.7 5e-13 >seq32 Length=1043406 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| ||| || || |||||||| |||| | Sbjct 731097 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 731156 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| ||||| || |||||||||| || Sbjct 731157 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 731216 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| || | |||||| Sbjct 731217 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 731276 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||||||||||||||| Sbjct 731277 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| ||| || || |||||||| |||| | Sbjct 739472 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 739413 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| ||||| || |||||||||| || Sbjct 739412 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 739353 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| || | |||||| Sbjct 739352 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 739293 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||||||||||||||| Sbjct 739292 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| || || | || ||| || | || |||| |||||| |||||||| Sbjct 737841 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 737782 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| |||| || ||||||||| ||||| ||||| | | Sbjct 737781 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 737722 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| ||| || || || || || | ||||||||| Sbjct 737721 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCAC 737662 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 737661 AAAAATTTGCAT 737650 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| ||| || ||||||||||| || | Sbjct 738788 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 738729 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || ||||| || |||||||| | ||| Sbjct 738728 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 738669 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| || | |||||| Sbjct 738668 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACC 738609 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 738608 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||||||||||||||| |||| Sbjct 738104 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 738045 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 738044 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 737985 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || |||||| ||| | | | | || ||||| | ||| || Sbjct 737984 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 737925 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 737924 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||| |||||| || || || Sbjct 738980 TCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAG 738921 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | |||| | |||||| ||| ||||| ||||| | | Sbjct 738920 ATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTC 738861 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | |||||| |||| ||| || || || || |||| || ||||| Sbjct 738860 TCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACG 738801 Query 35726 AATATCTGCAT 35736 ||||| ||||| Sbjct 738800 AATATTTGCAT 738790 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||||||||||||||| |||| Sbjct 738332 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 738273 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 738272 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 738213 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | || || || | ||| || Sbjct 738212 ATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738153 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 738152 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||||||||||||||||||||| | Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| ||||||||| || || ||||| ||||| || || | ||| Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 738441 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || |||||| ||| | | | | || || || | ||| || Sbjct 738440 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738381 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 738380 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || |||| |||| ||| || || ||||| Sbjct 731360 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 731419 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| || | | ||| ||||| ||||| ||||| | | Sbjct 731420 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 731479 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || || | || ||||| Sbjct 731480 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 731539 Query 35725 AAATATCTGCATTCTGTGCGCACACACACCACA 35757 ||| || ||||| || || | | | || |||| Sbjct 731540 AAAGATTTGCATGATGAGCACGCTCGCAGCACA 731572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || |||| |||| ||| || || ||||| Sbjct 739209 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 739150 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| || | | ||| ||||| ||||| ||||| | | Sbjct 739149 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 739090 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || || | ||| || || Sbjct 739089 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTAC 739030 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 739029 GAAGATCTGCAT 739018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 739664 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 739605 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || ||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 739604 ATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 739545 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || ||||| | ||||| || || || || | ||| || || Sbjct 739544 TCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACG 739485 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 739484 AAGATCTGCAT 739474 >seq40 Length=886339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 |||| ||||||||| |||||||| |||||||| |||||| |||||||| | |||| | | Sbjct 230624 AGGAGTTATGTGGTCAATTTGCGGAGTCCACGATCAGGGC-TGGCGAGAACGACCCGTTT 230682 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 ||||||| | ||||||||||||| | || || ||||| |||||||| Sbjct 230683 TCGGCAAAATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 230734 >seq3 Length=2943993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | |||| || | || |||| ||||| || ||||| Sbjct 307590 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 307649 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | |||| | ||||||||| ||||| ||||| | | Sbjct 307650 AATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATT 307709 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| | || ||||| | ||||| ||||| || || | ||||||||| Sbjct 307710 CTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 307769 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 307770 AAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450773167780080