Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq32 127 2e-24 seq12 87.8 2e-12 >seq32 Length=1043406 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| ||||| || || || |||||||||||||| ||||| | |||| || Sbjct 737867 AGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGA 737808 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || ||||| || | ||| ||||| || || || ||||| || Sbjct 737807 CCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCC 737748 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||||| | |||||| || || ||| Sbjct 737747 TTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTA 737688 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||||| |||||| || ||||||||||| Sbjct 737687 ATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||||||||||||||||||| || || || Sbjct 739235 AGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGA 739176 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||||||||| ||||| ||||||||||||||||| || || || || ||| Sbjct 739175 CCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCT 739116 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | | || | || || ||||| || Sbjct 739115 TTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTG 739056 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || ||||| || ||||| Sbjct 739055 ATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||||||||||||||||||| || || || Sbjct 731334 AGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGA 731393 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||||||||| ||||| ||||||||||||||||| || || || || ||| Sbjct 731394 CCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCT 731453 Query 134616 TTTTCTTGAATTTT 134629 || |||||||| || Sbjct 731454 TTGTCTTGAATCTT 731467 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || |||||||| |||||||||||||| | ||| || Sbjct 739007 AGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGA 738948 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| || || ||||||||||||||||| ||||| || || || Sbjct 738947 CCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCC 738888 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | ||||||| | |||||| || || ||| Sbjct 738887 TTATCCTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTA 738828 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| |||||||| Sbjct 738827 ATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | |||||| || ||||| || ||||||||||||||||| || | Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||| || || || |||||||||||||| ||||| ||||| Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 738441 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || || || || | | || | ||| || Sbjct 738440 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738381 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||| ||| || || || || ||||| Sbjct 738380 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | || || | ||| || || || |||||||||||||| ||||||||||| | Sbjct 748786 TTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAG 748727 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| |||| || || || | ||| || || ||||| |||| || |||||||| || Sbjct 748726 ACAA-GGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGT 748668 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || ||||| ||| || || || | | ||| | ||| Sbjct 748667 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 748608 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || ||||| || ||||| |||||||| Sbjct 748607 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| || || ||||| || ||||||||||||||||||||| || ||| | Sbjct 738095 AGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGG 738036 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || || || ||||| |||||||||||||| || || || ||||| || Sbjct 738035 CCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCC 737976 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | | ||| | ||| || || || || Sbjct 737975 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTT 737916 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||| ||| || || ||||| ||||| Sbjct 737915 ATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| || || ||||| || ||||||||||||||||||||| || ||| | Sbjct 738323 AGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGG 738264 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || || || ||||| |||||||||||||| || || || |||||||| Sbjct 738263 CCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCC 738204 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | | || | ||| || || || || Sbjct 738203 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTT 738144 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||| ||| || || || || ||||| Sbjct 738143 ATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| ||||| || ||||| |||||||| ||||||||||| Sbjct 749240 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAT 749181 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | ||| ||||| || || ||||| || ||||| || || || Sbjct 749180 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGA 749121 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| || || || | | ||| | ||||| Sbjct 749120 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACC 749061 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| ||||||| ||| || ||||| || |||||| Sbjct 749060 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || |||||||| ||||||||||||||| | ||| || Sbjct 739691 AGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGA 739632 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| || || ||||| || || || || || || ||||| ||| Sbjct 739631 CCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCT 739572 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | | || | || || ||||| || Sbjct 739571 TTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTG 739512 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || ||||| || ||||| Sbjct 739511 ATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 >seq12 Length=1725783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||| | || || || || || || ||||||||||| || |||||| Sbjct 1077049 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 1076990 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| || || || || || | || || ||||| || ||| Sbjct 1076989 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 1076930 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| |||||| ||| || || | | || | || || Sbjct 1076929 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 1076870 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| || || | ||| ||||| |||||||||||| Sbjct 1076869 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375492817520