Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25 286 5e-72 seq10 241 2e-58 >seq25 Length=1211561 Score = 286 bits (316), Expect = 5e-72 Identities = 436/616 (71%), Gaps = 4/616 (1%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || ||| |||||| || || |||||| ||| | | || || || |||| || | Sbjct 250506 TAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCC 250447 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || || | |||| | | | ||| |||||| ||||| |||||||||||||||||||| Sbjct 250446 ATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGT 250387 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || | |||||||| | | | | | |||||| || || || || | || | | Sbjct 250386 GCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACA 250327 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 |||| || | ||| | |||||||||||| ||||| || || | | | || |||||||| Sbjct 250326 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 250267 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 || ||||||||||| | || | || ||| | || |||| | |||||||| | || | Sbjct 250266 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 250207 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG-CGAATATTACTAAT 69866 ||||| || | ||||| ||||||| |||| ||| | |||||| || || || Sbjct 250206 CCATTGGACTCCCCATTAGTTCCAGCAATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 250148 Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926 | ||||| || || || || |||| ||||| || ||||| |||| | |||||||| Sbjct 250147 ATTGAGACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATA 250088 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||||||| || || || || |||| |||| | ||||||||||||||| ||| | | Sbjct 250087 TATACCCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTA 250028 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 || || |||||||| | || || || |||||| | ||||| |||||||| | || Sbjct 250027 AGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAG 249968 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCA 70105 |||||| || |||||||| | || | ||| ||| |||||| ||||| | ||| |||| Sbjct 249967 ATTGTAGGTCTCAATAGCAGCGTCCACATCTTCAC-CATGAATACCTATTGAGACGCGCA 249909 Query 70106 TCAACATATGCTGAGG 70121 | ||||| | |||||| Sbjct 249908 TAAACATGTACTGAGG 249893 >seq10 Length=2030774 Score = 241 bits (266), Expect = 2e-58 Identities = 433/632 (69%), Gaps = 3/632 (0%) Strand=Plus/Plus Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 ||||||||| || | ||| || || || || ||||| ||||||| ||| || | || Sbjct 443144 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 443203 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 |||| ||| ||||| |||||||| ||||||||||| |||||||| || |||| |||||| Sbjct 443204 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 443263 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || ||||||||||| | ||| || | || || || || || || | ||| |||| Sbjct 443264 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 443323 Query 39781 TGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837 || | |||| | |||||| | | |||||||| || ||||| ||||| |||| Sbjct 443324 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 443383 Query 39838 TGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTAT 39897 |||| || || ||||| ||| | | ||| | ||| || || || ||||| || Sbjct 443384 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAAT 443443 Query 39898 TAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 | ||| |||||||| ||||| |||||||| | || | || | ||| |||||||| Sbjct 443444 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 443503 Query 39958 TCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 | || || | |||||| ||||| |||||| | | | ||||||||| || || Sbjct 443504 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 443563 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077 |||||||| || || || || ||||| |||| ||| || | || | | Sbjct 443564 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 443623 Query 40078 CAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGA 40137 | | | ||||||| ||| ||| || | || ||| ||||| ||| ||||||| || || Sbjct 443624 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 443683 Query 40138 CGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || | || || ||||| | | ||| |||||| | ||||| || || | | ||| || Sbjct 443684 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 443743 Query 40198 TCTATTTGGATTTTTTGCAAGGATGGGTTCCA 40229 ||| ||||| |||| || ||||||| Sbjct 443744 TCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877665858640