Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10 152 4e-32 >seq10 Length=2030774 Score = 152 bits (168), Expect = 4e-32 Identities = 397/593 (67%), Gaps = 13/593 (2%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || || ||| | || || ||||| ||||| || ||| | | ||||| ||||| Sbjct 443746 AGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTT 443687 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815 || || || ||||||| || ||||||||||| | || || | | | ||| | | Sbjct 443686 GCCTCTTTCTGGACAGTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGT 443627 Query 43816 ATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | || || || || || | || ||||| || || || || || | Sbjct 443626 CTTAATGATGGCGAGCGTCAC--TTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTG 443569 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933 | || || || ||||||||| | | | ||| | || || || ||| | || || Sbjct 443568 ATGGCATCGTTAATGAAAATCTAACTT-TGAATTTTTGTAACGAGGTCCAAATTCCCGAG 443510 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || ||||||||||| | ||| | ||| ||||||| |||||||| ||||||||| | Sbjct 443509 GCTCGTTGTTTTTATGGAATGCAAGTCGCCGTAGAAAACATTCATTCTGAAATGTACTCT 443450 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGAT 44052 |||||||| ||||| ||| | || ||| | || | || | | ||||||| || || Sbjct 443449 CTTCTGATTGATACCTACGTAAAGGATCCGGTAGA-ACGCGACTTTCTGTTTAACGCCAT 443391 Query 44053 AGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108 |||| | || || | || | || || || ||||| |||| ||||| |||| Sbjct 443390 TCAAACGTTGCCGTGTG-TTGCTAAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATA 443332 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | | | | || || || || ||||| || | | | || ||| | ||||||| Sbjct 443331 AAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTT 443272 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||| |||| || ||| | ||||| || ||| | |||||||| | || | Sbjct 443271 CTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCT 443212 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || ||| | || ||||| ||||||||| | || |||||||| ||| Sbjct 443211 TTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGCATGC 443159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438435674130