Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq32 116 3e-21 seq12 91.5 1e-13 >seq32 Length=1043406 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || |||||||| ||||| || | |||| ||||||| | ||| Sbjct 738537 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 738478 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| ||| |||| | |||||||||||| ||||| | ||||| ||||| |||||| Sbjct 738477 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 738418 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | | || ||| |||||||||||| ||||| | ||||| || Sbjct 738417 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGT 738358 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| Sbjct 738357 TAGAGTCTTGACAAAGATCTGCAT 738334 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | || | || | ||| || || |||||||| ||||||||| Sbjct 731323 TGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG 731382 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || |||| || | |||||| || || | || | |||||| |||||||| | Sbjct 731383 AAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTG 731442 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || |||||| |||| | || | | || | | |||| Sbjct 731443 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 731502 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| || || || || || ||||||||||||||||| Sbjct 731503 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || |||||||| ||||||||| | |||| | ||||| | || Sbjct 738081 ATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTG 738022 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| || | || | |||||| || || || || | ||||| ||||| |||||| Sbjct 738021 CTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTT 737962 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | | || ||| |||||||||||| ||||| | ||||| || Sbjct 737961 CGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGT 737902 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||| || ||||| Sbjct 737901 TAGAGTCTTGACAAAAATCTGCAT 737878 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || |||||||| ||||||||| | |||| | ||||| | || Sbjct 738309 ATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTG 738250 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| || | || | |||||| || || || || | || || ||||| |||||| Sbjct 738249 CTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTT 738190 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | | || ||| |||||||||||| ||||| | ||||| || Sbjct 738189 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGT 738130 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| Sbjct 738129 TAGAGTCTTGACAAAGATCTGCAT 738106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| || ||||| || | |||| | ||||| | ||| || || Sbjct 737846 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 737787 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || ||||| || || ||||| || | ||||| || || ||||| ||| Sbjct 737786 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 737727 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| ||| || || || || || | ||||| || |||||| Sbjct 737726 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 737667 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 737666 TTCACAAAAATTTGCAT 737650 >seq12 Length=1725783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 27007 TTTCA-TAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 ||||| || || ||||||| || | | | || | ||| | || || || |||||| Sbjct 1077064 TTTCAGTATTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGA 1077005 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 ||||| |||||| | | ||| |||| || | ||| ||||||||| | || || || Sbjct 1077004 ATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGT 1076945 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 |||||||| || || | |||||||| || ||| || ||| | | | || | | Sbjct 1076944 TGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAA 1076885 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 || | | ||||| || || ||||| | ||| || || ||||| || ||||| |||||| Sbjct 1076884 TCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGC 1076825 Query 27246 AT 27247 || Sbjct 1076824 AT 1076823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915621352112