Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 123 3e-23 >seq25 Length=1211561 Score = 123 bits (136), Expect = 3e-23 Identities = 420/646 (65%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 111445 GGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 ||||| | ||| ||| ||||||||| | ||| || ||| |||||||| ||| || Sbjct 250535 GGCCCCTACCTTCCGACTCGTACTTCGCGTAAAGCATTTCGAACTCCTCCCCCCAACAGT 250476 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 | | ||||| || || | || | || | ||| || |||| ||||||| | Sbjct 250475 CAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGTCCACGAACTACCTGCCTCAACTC 250416 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTT 111623 |||||||||| || || |||||||| || | |||||||| | | ||| ||||| Sbjct 250415 GCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTT 250356 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | || ||| |||||||| | |||| || | ||||| |||||||| || | Sbjct 250355 CAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGA 250296 Query 111684 GATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTG 111739 |||||| || | | || | || | | || | |||| ||||| || || ||| Sbjct 250295 GATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGATCGACATAACGAGCGGTG 250237 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 111799 ||| || || |||||||| || | || ||||| || | ||||| || || |||| Sbjct 250236 CTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCAATA 250177 Query 111800 CGAGATTTATTGGCTCTCACAT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 | || || ||| || || || || | | | || || || || || || | Sbjct 250176 AACGTATTCTT-GCT-TCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCG 250119 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| | ||||| | | || || |||| ||||| | ||| ||| ||||| | | Sbjct 250118 AGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTG 250059 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 | | || || || |||||||| || || || |||||||| || || || |||| Sbjct 250058 TAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTG 249999 Query 111978 TTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 112037 |||||||| ||| || ||||| | ||| ||||| | ||| || | | Sbjct 249998 AGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACAT 249939 Query 112038 CTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| || || || || |||| ||| ||||| ||||||||||| || Sbjct 249938 CTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGG 249893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003534449600