Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq25 123 3e-23 seq10 87.8 2e-12 >seq25 Length=1211561 Score = 123 bits (136), Expect = 3e-23 Identities = 353/541 (65%), Gaps = 5/541 (1%) Strand=Plus/Minus Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 || ||| ||||||| ||||||||||| || || || ||||| || || ||||||||| Sbjct 250432 ACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATC 250373 Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140 |||| |||| |||||| | || || || ||||||| ||| | || | ||| Sbjct 250372 CCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATC 250313 Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGCCTGGT 119196 || ||||| ||||| || || | || | | || | | | | || |||| | Sbjct 250312 CGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGAT 250254 Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256 ||||| | || ||| ||| || || |||||||| || | | ||||| ||| | | Sbjct 250253 CGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCC 250194 Query 119257 CATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATAC 119316 |||| || || |||| | || ||| || || ||| | | | ||| || | Sbjct 250193 CATTAGTTCCAGCAATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCC 250134 Query 119317 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 119376 | || || || ||||| | || || | |||| || | || || || ||||| Sbjct 250133 CACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATAC 250074 Query 119377 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGT 119436 ||| |||| ||| | | || ||||| ||||| ||||| || || ||||| | Sbjct 250073 TGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCAT 250014 Query 119437 TGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCA 119496 | || ||||| |||| ||||| || ||| || ||||| | ||||||||| | Sbjct 250013 TAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAA 249954 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 | ||| | ||||| || |||||||| || ||||| |||||||||||||| || | Sbjct 249953 TAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAG 249894 Query 119557 G 119557 | Sbjct 249893 G 249893 >seq10 Length=2030774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/245 (68%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| ||| |||||| || || || || ||| || || || ||| || || Sbjct 443163 GCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCA 443222 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| |||||||| | |||||| || | | |||||| ||||| ||||| | Sbjct 443223 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACG 443282 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTAT---CA 130192 ||||| | | |||||||| | |||||||| || | | | | |||| ||| || Sbjct 443283 CCCTCAATAGCAGCGAACGCCACCAGACGCTCCGC---GTACGGTGCCTTTTTATTTGCA 443339 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | |||| | | ||||| | ||||| || | | |||||| | || || || || | | Sbjct 443340 ATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTA 443399 Query 130253 AAGAG 130257 || || Sbjct 443400 AACAG 443404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618407169424560