Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-19 seq25 109 6e-19 >seq10 Length=2030774 Score = 111 bits (122), Expect = 2e-19 Identities = 367/564 (65%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||| ||| | |||| | || ||||||||| | | || |||||| | || ||||| Sbjct 443722 TACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACAGTTGAGGAA 443663 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||| | || || || | || ||||| | || ||| | | ||||| || ||| Sbjct 443662 GTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTTAATGATGGCGAGCGTCACTTC 443603 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || | ||| |||| ||||||||||| |||||||| || || | |||||| || Sbjct 443602 ATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAATGAAAATCTAACT 443543 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT--CAGT 59811 |||| |||| || || ||||| ||| ||||||| || | || || | | || ||| Sbjct 443542 TTGAATTTTTGTAACGAGGTCCAAATTCCCGAGGCTCGTTGTTTTTATG-GAATGCAAGT 443484 Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 || | || || || || || | |||||| || |||| |||| | || |||| Sbjct 443483 CG-CCGTAGAAAACATTCATTCTGAAATGTACTCTCTTCTGATTGATACCTACGTAAAGG 443425 Query 59872 ATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAA 59931 |||||| ||| | |||||| ||||| | |||| || ||| | | Sbjct 443424 ATCCGGTAGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGA 443365 Query 59932 AAGCAGAATGGGCCATGCAGTGGAT---GAGTCCTGGAGCATCATTTGCACAACGTCTCA 59988 | || || ||||| | |||||| | | ||| | | || | ||||| Sbjct 443364 AGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCACCGTACGCGGAGCGTCTGG 443305 Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 | || || || ||| | || || | ||||| ||||| || || | | || |||||| Sbjct 443304 TGGCGTTCGC-TGCTATTGAGGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTCTGG 443246 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 ||||| |||||||| |||||||| ||||| | || ||||||||||| || || Sbjct 443245 CTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGAT 443186 Query 60108 GAGGGCCTCCATCAGGAGTTTGCA 60131 || |||||||| ||| |||||| Sbjct 443185 GAAGGCCTCCACACGGATTTTGCA 443162 >seq25 Length=1211561 Score = 109 bits (120), Expect = 6e-19 Identities = 353/540 (65%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 79371 CTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACG 79430 |||||| || |||||| || || || ||||| || || |||||| || || || Sbjct 250423 CTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCG 250364 Query 79431 CATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCA 79490 ||||| || |||| |||| || | ||| | ||| | || | || | ||||| Sbjct 250363 AATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCA 250304 Query 79491 CGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCG 79550 || || ||||||||||| || | ||| || ||| ||| ||||| | ||| || || Sbjct 250303 TGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACG 250244 Query 79551 GGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCC 79610 || ||| ||||||| || || ||||| || || | || | || | || || || || Sbjct 250243 AGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCC 250184 Query 79611 GTTGATTCGTGTACCGCTCGCC-CGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGAC 79668 || ||| || || || ||| || || || | ||||| || || | Sbjct 250183 AGCAATAAACGTATT-CTTGCTTCGGATGCAGTGAACATTG-AGACCGATCCCACCCGCG 250126 Query 79669 CACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCC 79728 || ||||| | || || | |||||||| || || || |||||||| ||||||| Sbjct 250125 TTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCC 250066 Query 79729 TTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGG 79788 ||||| | | || || ||||| |||||||| |||| ||| || || || || || Sbjct 250065 TTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 250006 Query 79789 GTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC-CTTGACGCG 79847 || || | ||||| | || |||||| ||| |||| ||| ||||| | | ||| Sbjct 250005 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCG 249946 Query 79848 CGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 | || || || || || || | | ||||||||| || | |||||| ||| |||| Sbjct 249945 -TCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548499938113440