Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25 140 4e-28 seq51 100 3e-16 >seq25 Length=1211561 Score = 140 bits (154), Expect = 4e-28 Identities = 354/530 (67%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||||||||| | || ||||||||| | | ||||| || ||||| || | || Sbjct 249887 GAGAGGCCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGAC 249946 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||| ||| | ||||| |||||| || | |||||| | || || Sbjct 249947 GC-TGCTATTGAGACCTACAATCTAATGTCTGAAAAGTGGTTGATTCACGCCTCACCCAC 250005 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||||| ||||| || || | | ||||| Sbjct 250006 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATGAA 250065 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| ||||| || || || || |||||||| | ||||| | ||||| || Sbjct 250066 GGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAA 250125 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAA--CGGCACAC--CAATCA 53468 ||||||| |||||| | || || || || | | | |||| | | || || Sbjct 250126 CGCGGGTGGGATCGGTCT-CAATGTTC--AC-TGCATCCGAAGCAAGAATACGTTTATTG 250181 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || ||||| || |||||||||| ||| | Sbjct 250182 CTGGAACTAATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCG 250241 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || || ||| | ||||| || || || || | || |||||||| ||||| | Sbjct 250242 CTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAAC 250301 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 | ||||| | || | || ||||| | ||| | || ||| || | ||||||| Sbjct 250302 CATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGA 250361 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||| || || || || || || |||||||| || || |||||| Sbjct 250362 TTCGCGCTCGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATG 250411 >seq51 Length=753372 Score = 100 bits (110), Expect = 3e-16 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| |||||||| ||||| | || | |||||||||||| || ||||||||||||| Sbjct 496329 GGCG-GTGAAAATATAACGGGCAGAAGCGGAATCCTTGCCACCGGCGAGACGCGTACCGA 496271 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || ||| ||| ||| || || |||||||||| || ||||||| ||||||| Sbjct 496270 ACTGACCATAGGGCATCAACAGATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGTC 496211 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 | || || || |||| | |||| |||||||| || | | | ||| |||||| Sbjct 496210 CAATGATGGTGCCCATGAGGGACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCACG- 496152 Query 117480 AGC-CCGCC-AGCTGAGCCACCTTCATGTC 117507 || |||| | |||||||||||| || || Sbjct 496151 -GCACCGCATAACTGAGCCACCTTAATTTC 496123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191197434800