Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq32 116 2e-21 seq12 100 2e-16 >seq32 Length=1043406 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||||| || |||||||||||||||||| || || Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| |||| ||| || |||||||| || Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || || | ||||||||| | ||||| Sbjct 737756 ATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 737698 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||||| |||||||||||||| ||||| Sbjct 737697 CTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||| || || ||||||||||||||| || || || Sbjct 738105 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 738046 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 738045 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 737986 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| |||||| |||| || | ||| | || | || | Sbjct 737985 AATGCCCTCCTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAA 737927 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||||| || || ||||||| || || |||||||||||||| Sbjct 737926 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||| || || ||||||||||||||| ||||| ||||| || || Sbjct 738551 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGA 738492 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | || ||||| || || || ||||||||||| || ||||| | |||||| Sbjct 738491 CCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCC 738432 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | || ||| | ||| | || | || ||||| | || Sbjct 738431 TTATCTTGGATC-TTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGT 738373 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || ||||||| || || ||||| ||||||||| Sbjct 738372 TATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738333 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||| || || ||||||||||||||| || || || Sbjct 738333 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 738274 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 738273 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 738214 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||| || | || ||| | ||| | || | || | Sbjct 738213 AATGCCTTCCTTATCTTGGATC-TTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAA 738155 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||||| || || ||||||| || || ||||| ||||||||| Sbjct 738154 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738105 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||| | || || ||| ||||||||| ||||| || || || Sbjct 749241 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 749182 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | || || || || || || || || || ||||| || || Sbjct 749181 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGG 749122 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| |||| || ||| | ||| | ||| | ||||| Sbjct 749121 AATGCCCTCCTTGTCCTGGATC-TTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCA 749063 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| ||||||| || ||||| || |||||||| Sbjct 749062 CCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 749014 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || || ||||||||||||||| || || ||||| || || Sbjct 731334 AGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGA 731393 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | ||||| || ||||| || |||||||| || ||||| || | ||||| Sbjct 731394 CCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCT 731453 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || || | ||| | || ||| || || | ||| Sbjct 731454 TTGTCT-TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 731512 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || ||||| | ||| |||||||| || |||||| ||| Sbjct 731513 GATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGATGA 731556 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || || ||||||||||||||| || || ||||| || || Sbjct 739235 AGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGA 739176 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | ||||| || ||||| || |||||||| || ||||| || | ||||| Sbjct 739175 CCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCT 739116 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 739115 TTGTCTTGAATCTT 739102 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || ||| || |||||||| || || || || || || | Sbjct 738777 ACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACC 738718 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | || || || || || || || || || ||||| || || | |||||||| Sbjct 738717 ATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 738658 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| |||| || | || ||| | || | ||| | |||||| |||| ||| | Sbjct 738657 GTCCTGGATC-TTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGA 738599 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| | ||||| ||||| |||||||| Sbjct 738598 TGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 >seq12 Length=1725783 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||||||||| ||||| || || || || ||| |||| || | || Sbjct 1077026 ATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTG 1076967 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||| || || | || ||||| || || || | |||||| |||||| ||| || Sbjct 1076966 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGAT-TT 1076908 Query 34623 TTGTTTTAACGATAAAATTG---TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||| ||| | | || | ||| | ||| || || | |||||| ||||| || Sbjct 1076907 TTGCTTTTACGTTCTCAATGGAATCACTTGG--CTCAACCTCAAGGGTTATGGTTTTTCC 1076850 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| ||||| Sbjct 1076849 AGTGAGAGTCTTAACAAAAATTTGCAT 1076823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314715691508858