Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq32 167 2e-36 seq3 149 5e-31 seq12 131 1e-25 >seq32 Length=1043406 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| ||||| ||| |||| || || || || || || Sbjct 739018 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739077 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || || |||||||||||||| || || ||||| ||||| Sbjct 739078 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 739137 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| ||||| ||| || ||| ||||||| |||||| Sbjct 739138 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAAC 739197 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || | || | ||| |||| |||||||| Sbjct 739198 ATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGCAT 739247 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || ||||| ||| |||| || || || || || || Sbjct 731552 CATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 731493 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || |||||||||||||| || || ||||| ||||| Sbjct 731492 TGATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 731433 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || |||||||| ||||| ||| || ||| ||||||| ||||| Sbjct 731432 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 731373 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | || | || | ||| |||| |||||||| Sbjct 731372 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGCAT 731322 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||||||| | || || || ||||| ||||| Sbjct 738333 CATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 738392 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || || ||||| || || ||||| || || ||||| Sbjct 738393 TGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGCCAGATCA 738452 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || || || ||||||||| || || |||| |||||||| Sbjct 738453 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAA 738512 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | ||| | || | || | || ||||| || Sbjct 738513 CATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTAT 738563 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||||||| | || || || ||||| ||||| Sbjct 738105 CATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 738164 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || || ||||| || |||||||| ||||| || || Sbjct 738165 TGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCA 738224 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || || || ||||||||||| | || ||||||| ||||| Sbjct 738225 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAA 738284 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | ||| | || | || | || |||||||| Sbjct 738285 CATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCAT 738335 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||||||| | || || || ||||| ||||| | Sbjct 737878 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 737937 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || || || ||||| || || ||||| ||||| || || Sbjct 737938 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 737997 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || ||||||||||| | || ||||||| |||||| Sbjct 737998 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAAC 738057 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | ||| | || | || | || |||||||| Sbjct 738058 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCAT 738107 Score = 141 bits (156), Expect = 8e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||||||| | ||||| || || |||||||| | Sbjct 737650 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 737709 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||||||||| || ||||| ||||| || || Sbjct 737710 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 737769 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || || || || |||||||| || ||| | || || || ||| Sbjct 737770 CAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 737829 Query 27168 ATTCAAAAGGAGTCGACC 27185 |||||||||||||| ||| Sbjct 737830 ATTCAAAAGGAGTCAACC 737847 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || ||||| || ||| ||||||| || ||||||||||| Sbjct 738789 CATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAG 738848 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || || || ||||| || || || || || || || ||||| Sbjct 738849 CGACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCA 738908 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || ||||| || || ||| | || || ||||| Sbjct 738909 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAA 738968 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| |||||| | || | || | ||| |||| ||||| || Sbjct 738969 CATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGGTAT 739019 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || ||||||||| | || || | || ||||| || Sbjct 738562 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 738621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 738622 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAG 738681 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || || ||||| || || || | || || |||||| Sbjct 738682 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAAC 738741 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| | || ||||| |||||||||| |||||||| Sbjct 738742 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 738791 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| ||||| ||| |||| || || || || || || Sbjct 739474 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739533 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || || |||||||||||||| ||||| || || || ||| Sbjct 739534 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAA 739593 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || |||||||| || || | ||||| |||||| Sbjct 739594 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 739653 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| ||||| |||||| Sbjct 739654 ATTCAGAAGGAATCGACC 739671 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || ||||| || ||| | ||||| | || ||||| || Sbjct 731324 CATGCAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAG 731265 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 731264 TGACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 731205 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 || || || || | || || || || ||||| || | ||| |||| ||||| |||| Sbjct 731204 GCAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGA-TGGTCGCACGTTGTCCGACTACA 731146 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || |||||||| | || ||||| | ||| | || ||||| || Sbjct 731145 ACATCCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGTCTTCGTGGTGGTAT 731094 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || ||||| || ||| | ||||| | || ||||| || Sbjct 739245 CATGCAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCAAG 739304 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 739305 TGACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 739364 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 || || || || | || || || || ||||| || | ||| |||| ||||| |||| Sbjct 739365 GCAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGA-TGGTCGCACGTTGTCCGACTACA 739423 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || |||||||| | || ||||| | ||| | || ||||| || Sbjct 739424 ACATCCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGTCTTCGTGGTGGTAT 739475 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| |||||||| | || || || || ||||| || Sbjct 749014 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 749073 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || ||| || || ||||| || ||||| || || || || Sbjct 749074 GACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 749133 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || |||||||| | ||| | || || |||||| Sbjct 749134 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAAC 749193 Query 27168 ATTCAAAAGGAGTCGACC 27185 || ||||||||||| ||| Sbjct 749194 ATCCAAAAGGAGTCCACC 749211 >seq3 Length=2943993 Score = 149 bits (164), Expect = 5e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| |||||||| |||||||| |||| |||||||| || || || Sbjct 307785 CGGCATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCC 307726 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||| || ||||||| || || || ||||||||||| || || || ||||| || Sbjct 307725 CTCCGATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGA 307666 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | || ||||| |||||||| || | || | || ||||| Sbjct 307665 CCAACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTA 307606 Query 27164 CAACATTCAAAAGGAGTCGACC 27185 ||| ||||| |||||||| ||| Sbjct 307605 CAATATTCAGAAGGAGTCAACC 307584 >seq12 Length=1725783 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | || || ||||| || || || Sbjct 1076823 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 1076882 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||||| || ||| |||||| ||||||||||| || |||||||| |||||| Sbjct 1076883 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 1076942 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| || || ||||| ||| | ||| | ||||| || || Sbjct 1076943 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAAT 1077002 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||||||||| | ||| | ||| Sbjct 1077003 ATTCAAAAGGAGTCGACACTCCATCTTGTT 1077032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898687323520