Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq32 187 6e-42 seq12 163 7e-35 seq3 134 3e-26 seq31 84.2 5e-11 >seq32 Length=1043406 Score = 187 bits (206), Expect = 6e-42 Identities = 177/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || ||||||||||| |||||||| ||||||||||| || || | || Sbjct 749238 TCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAG 749179 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||||| ||||||||| |||||||| | ||||| ||||| ||||||| Sbjct 749178 GGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAAT 749119 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||||||||||||| |||||||| || || | |||| | || ||||| Sbjct 749118 GCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTC 749059 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || || || |||||||| || || | ||||||| Sbjct 749058 CAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||||| || || || || |||||||| || || | | || Sbjct 730874 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGT 730933 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||||||| |||||||| | ||||||||||| || || | || Sbjct 730934 GCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCC 730993 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| |||||||| || || | ||| ||||||||||| Sbjct 730994 CTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAG 731053 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || ||||||||||| || | |||||| Sbjct 731054 GGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| ||||||||||| || ||||||||||| || || | | ||| Sbjct 748779 ACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGT 748720 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || ||||| |||||||| || || || |||| || Sbjct 748719 GCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCC 748660 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| |||||| ||||| || || || | |||| | || ||||| || Sbjct 748659 CTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAG 748600 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | |||||| || || | ||||| Sbjct 748599 TGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||| || || | || || | ||||| Sbjct 738773 AGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCC 738714 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| ||||||||||| | ||||| ||||| || |||| || ||||||||| Sbjct 738713 TCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCC 738654 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || || | |||| | || ||||| | ||||| ||| Sbjct 738653 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGTC 738594 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 738593 TTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||||| || || || || || ||||| || || | | || Sbjct 739695 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 739636 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||||||| |||||||| | ||||||||||| || || | || Sbjct 739635 GCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCC 739576 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| || ||||| ||||| || || || | ||| ||||||||||| Sbjct 739575 CTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAG 739516 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || ||||||||||| || | |||||| Sbjct 739515 GGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || |||||||| |||||||| || || | | || Sbjct 731102 ACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGT 731161 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| ||||| ||||| | ||||| ||||| || || | || Sbjct 731162 GCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCC 731221 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||||||||||||||| |||||||| || || | |||| ||| || ||||| Sbjct 731222 CTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCA---CTTGGCTCCACCTC 731278 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || || || ||||| ||||| | |||||| Sbjct 731279 CAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || |||||||| |||||||| || || | | || Sbjct 739467 ACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGT 739408 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| ||||| ||||| | ||||| ||||| || || | || Sbjct 739407 GCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCC 739348 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||||||||||||||| |||||||| || || | |||| ||| || ||||| Sbjct 739347 CTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCA---CTTGGCTCCACCTC 739291 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || || || ||||| ||||| | |||||| Sbjct 739290 CAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| ||||| ||||| || || | ||| |||| || || Sbjct 739229 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCC 739170 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| || ||||| | || || || || || || | || || ||||| Sbjct 739169 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 739110 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | ||| ||||||||||| ||||| ||| Sbjct 739109 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 739050 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||||||||| || | |||||| Sbjct 739049 TTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || || || ||||| || || | ||||| | ||||| Sbjct 739001 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCC 738942 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| | || || || ||||| |||| || ||||| ||| Sbjct 738941 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 738882 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| ||||| || || || ||||| ||| ||| || || || || || Sbjct 738881 TGAATCTTGGCCTTCACATTCTCAATTGTGTC---GCTAGGTTCCACTTCCAGCGTAATA 738825 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | ||||| Sbjct 738824 GTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| ||||| ||||| || || | ||| |||| || || Sbjct 731340 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCC 731399 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| || ||||| | || || || || || || | || || ||||| Sbjct 731400 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 731459 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | ||| ||||||||||| ||||| ||| Sbjct 731460 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 731519 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 731520 TTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 >seq12 Length=1725783 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||||||| ||||| || || || ||||| ||||| || ||||| || | || ||| Sbjct 1077043 CGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTC 1076984 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| |||||| || ||||||||||| |||||||| || || || | ||| Sbjct 1076983 CGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCC 1076924 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 || ||||| ||||| ||| ||| ||||| || |||| ||| ||| |||||||| Sbjct 1076923 TCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCA---CTTGGCTCAACCTCA 1076867 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || || || ||||| ||||||||||| ||||| | |||||| | |||| Sbjct 1076866 AGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTGGT 1076815 >seq3 Length=2943993 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || || || || ||||| | | || | |||||| Sbjct 307570 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 307629 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || || ||||| || |||||||| || |||| || |||||||| Sbjct 307630 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 307689 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | || ||| || ||||| |||||||| || Sbjct 307690 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 307749 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || ||||| | |||||| Sbjct 307750 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 >seq31 Length=1065932 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| || || |||||||| || || || || || || ||||||| |||| || Sbjct 102837 CTTCCGAAAAAACACGGAAGGGGTGGTCAGTCAGCGCTTCGTTTTGCCCGACTGCGTGTA 102778 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT 139922 ||||| |||||||||| |||||||||||||||||| ||| | |||| ||||| Sbjct 102777 GAAAAACGGCACAACTATGTGAGAAAAGTTGCAGAGACCGCGGTGCAGTTGTTTAT 102722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159098147971490