Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq32 149 1e-30 seq3 113 1e-19 seq12 111 4e-19 >seq32 Length=1043406 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||||||||| || || || ||||| | || || || | || || Sbjct 737871 ACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGT 737812 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 737811 GCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCC 737752 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||||||| || || ||||| || |||||| || | Sbjct 737751 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAG 737692 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||||||| || | |||||| | || | |||||| Sbjct 737691 CGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||||||||| ||||||| ||||| || | ||| || Sbjct 748779 ACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGT 748720 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || || ||||| || ||||| || || || ||||| || Sbjct 748719 GCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCC 748660 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || |||||| ||||||| || || | ||| || ||||| || | Sbjct 748659 CTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAG 748600 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||||||| || | ||| | |||||| Sbjct 748599 TGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || ||||| || ||||||| ||||| || | | || Sbjct 749235 ACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGT 749176 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||||||||| | |||||| ||||| || ||||| || Sbjct 749175 GCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCC 749116 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||| |||||| || || | ||| || ||||| || | Sbjct 749115 CTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAG 749056 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | ||| || | ||| | |||||| Sbjct 749055 TGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || || ||||| || |||| ||||| |||| ||| || Sbjct 730874 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGT 730933 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||||||||| | |||||||||||| || || || || Sbjct 730934 GCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCC 730993 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||| |||||| || || | || | || || || | Sbjct 730994 CTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAG 731053 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| |||| ||| | ||||| Sbjct 731054 GGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || || ||||| || || | ||||| |||| ||| || Sbjct 739695 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 739636 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||||||||| | |||||||||||| || || || || Sbjct 739635 GCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCC 739576 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| ||||| ||||||| || || | || | || || || | Sbjct 739575 CTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAG 739516 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| |||| ||| | ||||| Sbjct 739515 GGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || || || || || ||||| | ||||| |||| | ||| Sbjct 738327 ACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGT 738268 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 738267 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCC 738208 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 738207 TTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAG 738148 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 738147 CGTTATGGTCTTGCCGGTTAGAGTCTT 738121 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| || || | ||||| || | | || | ||||| Sbjct 739001 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCC 738942 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| | || || || || ||||||||||| ||||| || Sbjct 738941 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 738882 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || ||||| | |||||| || | ||| || ||| Sbjct 738881 TGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTC 738822 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | |||||| Sbjct 738821 TTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || || || || || ||||| | ||||| |||| | ||| Sbjct 738099 ACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGT 738040 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 738039 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCC 737980 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 737979 CTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAG 737920 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 737919 CGTTATGGTCTTGCCGGTTAGAGTCTT 737893 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || || ||||| | |||||||| | | ||| Sbjct 738555 ACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGT 738496 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| |||||||| || | || ||||| || |||||||| || Sbjct 738495 GCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCC 738436 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 738435 CTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAG 738376 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 738375 CGTTATGGTCTTGCCGGTTAGAGTCTT 738349 >seq3 Length=2943993 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || || | ||||||||| | || | | ||||| Sbjct 307570 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 307629 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || ||||| || |||||||| || ||||| || ||||||||| Sbjct 307630 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 307689 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || | || |||| || || || | ||||| || Sbjct 307690 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 307749 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | |||||| Sbjct 307750 TTGCCGGTAAGAGTTTT 307766 >seq12 Length=1725783 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| || ||||| ||||| || || || ||||| | ||| || |||| | ||| Sbjct 1077043 CGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTC 1076984 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || | |||||| || ||||||||||| |||||||| || || || || || Sbjct 1076983 CGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCC 1076924 Query 225613 TCCTTGTCTTGGATCTTTTGCTT 225635 || ||||||||||| |||||||| Sbjct 1076923 TCTTTGTCTTGGAT-TTTTGCTT 1076902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192475797236444