Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10 320 2e-82 seq25 226 4e-54 >seq10 Length=2030774 Score = 320 bits (354), Expect = 2e-82 Identities = 551/794 (69%), Gaps = 17/794 (2%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||| || |||||||| ||||||| ||| | ||||||||| || || || Sbjct 442989 AGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 443048 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||| || || || || |||||||| || ||||||| |||| || ||| || Sbjct 443049 TCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 443104 Query 46579 GATGTTA----CTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATG 46633 ||||| | | ||||| | | || | | || | | ||||||||| || | |||| Sbjct 443105 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG-ACAATATGTTTAAAAATGAGGCATG 443163 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 ||||||| || ||||||||||||| ||| || | |||||| ||| ||||| |||| Sbjct 443164 CAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAG 443223 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| |||||||| || || | || || || ||||||||||||| || Sbjct 443224 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGC 443283 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 | || | ||| ||||| || || || | ||| |||| || | |||| ||||| Sbjct 443284 CCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAATCC 443343 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 |||| |||||||||| ||||| || ||||| |||| |||| || || ||||| | Sbjct 443344 ACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACA 443403 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 |||||| ||| | ||| || || || ||||| || | |||| |||||||| | Sbjct 443404 GAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATCAGAAGAGAGTACATTTCAG 443463 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 ||||||||||||| | || | || | ||| |||||||| | || || | ||| || | Sbjct 443464 AATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGA 443523 Query 46991 CCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 |||| ||||||| ||| || | ||| ||||| || || |||||||| || || || Sbjct 443524 CCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAA 443581 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 || ||||| |||| ||| || | || | | | || | | ||||||| | Sbjct 443582 GAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGT 443641 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 || ||| || | || ||| ||||| ||| |||||||||| || || | ||||| || || Sbjct 443642 GAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTA 443701 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGC 47228 | | ||| |||||| | |||||||| || | | ||| ||||| ||||| | Sbjct 443702 GAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAGGAAC 443761 Query 47229 AAGTATAGGTTCCA 47242 |||||||||||||| Sbjct 443762 AAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 226 bits (250), Expect = 4e-54 Identities = 416/607 (69%), Gaps = 2/607 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || || |||||| ||| | | ||| || || |||| || ||| || | Sbjct 250498 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 250439 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||| || | || ||| ||| || ||||| || ||||| || ||||| || || | || Sbjct 250438 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 250379 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | | |||||| || || ||||| | || | |||| || Sbjct 250378 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 250319 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | |||||||||||| ||||| || || | |||| |||||||| || ||||| Sbjct 250318 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCC 250259 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 |||||| | ||| | || ||| | || | || | | ||| || | || || || || Sbjct 250258 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 250199 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCA-CGAATATTACTAATAGATAGGC 76877 ||||| ||||||| |||| ||| | | ||| || || || | || | Sbjct 250198 CTCCCCATTAGTTCCAGCAATA-AACGTATTCTTGCTTCGGATGCAGTGAACATTGAGAC 250140 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || || || |||| ||||| || ||||| |||| | |||||||| || |||| Sbjct 250139 CGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCT 250080 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | ||||| || ||| |||| |||| | ||||||||||||||| ||| | | | || | Sbjct 250079 CGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCC 250020 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | |||||||| | || || || || ||| | ||||| |||||||| | ||||||||| | Sbjct 250019 CAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGG 249960 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | |||||| | || || | ||| |||||| |||| | ||| ||||| ||||| | Sbjct 249959 TCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGT 249900 Query 77118 GCTGAGG 77124 |||||| Sbjct 249899 ACTGAGG 249893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902086248320