Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10 196 5e-45 >seq10 Length=2030774 Score = 196 bits (216), Expect = 5e-45 Identities = 399/590 (68%), Gaps = 6/590 (1%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 ||||||||||| || ||||||||||| | ||| |||| || ||| ||| || | Sbjct 443160 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 443219 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | || || || || | ||| || || | ||||||||| || |||||||| Sbjct 443220 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 443279 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 | ||||||| ||| || || ||||| ||||| | | | ||| || | || | | Sbjct 443280 ACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCA 443339 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | | ||||| |||||| |||||| | |||| ||| || || Sbjct 443340 ATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTA 443399 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 || ||||| |||| | ||| ||| || |||||||| || | | |||||| Sbjct 443400 AACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATCAGAAGAGAGTACATT 443459 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 ||||||||||| ||||| | || | || | ||||||||||| | ||| || | | | Sbjct 443460 TCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATT 443519 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 || || || ||| |||| | || || |||||| ||||| || |||||||| || || Sbjct 443520 TGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCG 443579 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATCAGTTGATAATTTTTTCCAA 23985 |||||||| | ||||| || || || | | ||||| || | | ||| ||| Sbjct 443580 AAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA-TTAAGA--CTTTCCCAG 443636 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||| | | ||| || | |||||||||||| ||||||||||| ||| || | || | Sbjct 443637 TCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTC 443696 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCT 24095 || || | ||||||||||| | ||| || || | | |||||||| Sbjct 443697 TTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 443746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521464363556400