Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 161 2e-34 seq32 145 2e-29 seq3 102 2e-16 >seq12 Length=1725783 Score = 161 bits (178), Expect = 2e-34 Identities = 172/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | |||||||| || || |||||||| |||||||| || ||||| ||||| || Sbjct 1076818 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-- 1076875 Query 177976 GCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || | |||| |||||||| ||| ||| || || |||||||| ||||| || || Sbjct 1076876 GCCAAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACC 1076935 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || || ||||| |||||||||||||| || ||| | || || || ||||||| |||| Sbjct 1076936 AGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGA 1076995 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | ||||| || || ||||| ||||||||| | ||||| Sbjct 1076996 CTATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACT 1077040 >seq32 Length=1043406 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| ||||| || || ||||| ||||| || |||||||| || ||| Sbjct 749017 CAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 749074 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || |||||| |||||||| || || || ||||| ||||||| Sbjct 749075 ACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGC 749134 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | |||||||| | || || | || || ||| Sbjct 749135 AACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAACA 749194 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || || ||||| Sbjct 749195 TCCAAAAGGAGTCCACCCTTCACCTTGT 749222 Score = 143 bits (158), Expect = 6e-29 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| ||| | || || ||||| ||||| || |||||||| || ||| Sbjct 748561 CAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 748618 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||||||||||||| || || || || || || |||| Sbjct 748619 ACTCGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGC 748678 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 |||| || ||||| || ||||| ||| | |||||||| | || |||| | || || ||| Sbjct 748679 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCAC-CTTGTCTGACTACAAC 748737 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 748738 ATCCAAAAGGAATCCACTCTTCATCTTGT 748766 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || || || || || || ||||||||| | ||| Sbjct 737653 CAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGAC 737712 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| ||||| || || || || |||||||||||| Sbjct 737713 ACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAA 737772 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || | || |||||| | Sbjct 737773 CGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATT 737832 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || || ||||| Sbjct 737833 CAAAAGGAGTCAACCCTCCACCTTGT 737858 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || ||||| || || || || |||||||||||||| | ||| | | Sbjct 731092 CAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 731035 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || |||||||| || |||||| |||||||| || || ||||| || ||||| | Sbjct 731034 ATTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAAC 730975 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | |||||||| | || | |||| || ||| Sbjct 730974 AACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACA 730915 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || ||||| Sbjct 730914 TCCAGAAGGAATCGACCCTTCACCTTGT 730887 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || ||||| || || || || || || |||||||||||||| | ||| | | Sbjct 731548 CAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 731491 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 731490 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAGC 731431 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | || || || |||||||| |||| || ||| Sbjct 731430 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAACA 731371 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || ||||| || || || || Sbjct 731370 TTCAAAAGGAGTCAACGCTTCACCTAGT 731343 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 738565 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 738622 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || || || || ||||||| Sbjct 738623 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAGC 738682 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| ||||| ||| | || ||||| | ||||| | || || ||| Sbjct 738683 AACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAACA 738742 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || || || || |||| Sbjct 738743 TTCAGAAAGAGTCGACGCTTCA-CTTG 738768 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || ||||| || || || || |||||||||||||| | ||| | | Sbjct 739021 CAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 739078 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 739079 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAGC 739138 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | || || || |||||||| |||| || ||| Sbjct 739139 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAACA 739198 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || ||||| || || || || Sbjct 739199 TTCAAAAGGAGTCAACGCTTCACCTAGT 739226 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || ||||| || || || || |||||||||||||| | ||| | | Sbjct 739477 CAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 739534 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| || ||||| | Sbjct 739535 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAAC 739594 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | |||||||| | || | |||| || ||| Sbjct 739595 AACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACA 739654 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 739655 TTCAGAAGGAATCGACCCTTCACCTTGT 739682 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || | |||||||| || || Sbjct 731320 CAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCAAGTG 731263 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || ||||| |||||||||| Sbjct 731262 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGC 731203 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 731202 AACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 731143 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || || || |||| Sbjct 731142 TCCAGAAAGAGTCGACGCTTCA-CTTG 731117 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || | |||||||| || || Sbjct 739249 CAGATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCAAGTG 739306 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || ||||| |||||||||| Sbjct 739307 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGC 739366 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 739367 AACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 739426 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || || || |||| Sbjct 739427 TCCAGAAAGAGTCGACGCTTCA-CTTG 739452 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| |||||||| || || || || || || || || || || |||||| ||| Sbjct 738793 CAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC--- 738849 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || ||||| || || ||||||||||| || || || || || || || ||| Sbjct 738850 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 738909 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | |||||||| || || ||| | || ||||| | || || | || || ||| Sbjct 738910 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 738969 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 738970 ATTCAGAAGGAATCGACCCTTCACCTTGT 738998 >seq3 Length=2943993 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||| ||||| || ||||| || ||| || Sbjct 307778 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 307719 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || |||||||| ||||| || || || || || ||||| || Sbjct 307718 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 307659 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | || |||||| | | | | ||||| || | Sbjct 307658 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 307599 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 307598 CAGAAGGAGTCAACCCTTCACCTTGT 307573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203675276905444