Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq32 136 4e-27 seq12 120 3e-22 seq3 82.4 7e-11 >seq32 Length=1043406 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || || || ||| |||||| || ||||| ||||| || Sbjct 749241 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 749182 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || | ||||||||| ||||| |||| || || ||||| | || Sbjct 749181 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGG 749122 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| ||| ||||| | | | ||| || | |||||| Sbjct 749121 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCAC 749062 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 749061 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 749014 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||| ||||| ||||| |||||||| Sbjct 731097 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 731156 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||| || || || |||| || || ||||||| || Sbjct 731157 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 731216 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | | ||| || | ||||||| Sbjct 731217 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 731276 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| || || || || ||||||||||| || || ||||||||| Sbjct 731277 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCATG 731324 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||| ||||| ||||| |||||||| Sbjct 739472 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 739413 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||| || || || |||| || || ||||||| || Sbjct 739412 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 739353 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | | ||| || | ||||||| Sbjct 739352 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 739293 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| || || || || ||||||||||| || || ||||||||| Sbjct 739292 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCATG 739245 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||| || || || || |||||||| ||||| |||||||| Sbjct 730869 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 730928 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | ||||||||| ||||| |||| || |||||||| | ||| Sbjct 730929 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGG 730988 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| ||| ||||| | | | || || | ||| ||| Sbjct 730989 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 731048 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || || || ||||||||||| |||||||| Sbjct 731049 TCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || |||||||||||||| ||||| || Sbjct 739016 CCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGAT 738957 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || | ||||||||| ||||| |||| ||||| || || | ||| Sbjct 738956 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGA 738897 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | |||||||| | ||||| Sbjct 738896 ATACCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCAC 738838 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| || || || || ||||||||||| ||||| || |||||| Sbjct 738837 TTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCATG 738789 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||| || ||||| ||||| || Sbjct 748784 CCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 748725 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | |||||| || || || |||||||| || || || | ||| Sbjct 748724 AAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGA 748665 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | ||||| |||| | | | ||| || | |||||| Sbjct 748664 ATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCAC 748606 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || |||| ||||| ||||| || ||||| Sbjct 748605 CTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || |||||| |||||||||||||| || Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | |||||| || || || || || || || ||||||| ||| Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | ||| | || | ||||| | | |||||||| | ||||| Sbjct 737756 ATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 737698 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| || || || || || || || || || ||||| ||||| Sbjct 737697 CTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || |||||||||||||| |||||||| Sbjct 739700 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 739641 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | ||||||||| ||||| |||| || |||||||| | ||| Sbjct 739640 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGG 739581 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||| |||| | ||| | || | ||||| | | | || || | ||| || Sbjct 739580 ATGCCCTCTTTGT-CTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAAC 739522 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||||||||| |||||||| Sbjct 739521 CTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || |||| ||| ||||| ||||| |||||| |||||||| |||||||| Sbjct 738105 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 738046 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||| || || || |||| ||||| ||||| | || Sbjct 738045 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 737986 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||| || ||| || ||| | | | | ||||| | || || Sbjct 737985 AATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAAC 737926 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | |||||| || || || || || ||||| || ||||||||||| Sbjct 737925 TTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | ||| | ||||| || ||||| ||| ||||||||||| ||||| || Sbjct 738789 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGA 738730 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || | |||||| || ||||| |||| || || ||||| | || Sbjct 738729 TAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 738670 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | | ||| || | |||||| Sbjct 738669 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCAC 738610 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || || || || || |||||||| Sbjct 738609 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || || ||||| |||||| |||||||| |||||||| Sbjct 739245 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 739186 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | ||| ||||| || || |||| ||||| || |||| || Sbjct 739185 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 739126 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | ||| ||||| ||| | || || |||| | | | || || | ||| | Sbjct 739125 GATACCCTCTTTGTCT-TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 739067 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||||||||| |||||||| Sbjct 739066 CCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 >seq12 Length=1725783 Score = 120 bits (132), Expect = 3e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || ||||| | || || ||||| || || |||||| ||||| ||||||||||| Sbjct 1077050 GCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGA 1076991 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || ||| |||| || | |||||| |||||||| || || || ||||| || | || Sbjct 1076990 GAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGG 1076931 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTG---TCGCTCGACTC 41811 | | ||| |||| | || ||||||||| ||| | || || || || | ||| Sbjct 1076930 TATTCCCTCTTTGT-CTTGGATTTTTGCTTTTACG--TTCTCAATGGAATCACTTGGCTC 1076874 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 1076873 AACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 1076823 >seq3 Length=2943993 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || |||||||||||| || || || || Sbjct 307555 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 307614 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | |||||||| || || || || ||||||||||| | ||| Sbjct 307615 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 307674 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || | ||||| | | || ||| | ||| || Sbjct 307675 ATCCCCTCCTTGT-CTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGAC 307733 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || ||||| || || || || || || |||||||||||| Sbjct 307734 CTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATG 307782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283046071200