Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 190 2e-43
seq8132 89.7 5e-13
>seq11759
Length=791511
Score = 190 bits (210), Expect = 2e-43
Identities = 513/781 (66%), Gaps = 8/781 (1%)
Strand=Plus/Plus
Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833
||| ||||| || | | || || ||| || || || |||||| || ||||||||
Sbjct 465883 GTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCG 465942
Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891
|| ||||| || |||||| || || || || || || | |||| | || || |||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAAT--TCGCATTCAATA 466000
Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951
||||| ||| | || || | ||| | |||| | | || | | ||| ||||
Sbjct 466001 CTGACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGT 466060
Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011
||||| || || ||||| ||||| || | || ||||||| ||||| || || |||
Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120
Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071
||| || | || ||||| || || ||||| | ||| || || | || || ||
Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180
Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131
||||||||||||| || || |||| || ||||| | | || |||||||| | ||
Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240
Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191
| ||| || |||||| | || |||| ||||| || | | || || ||||
Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300
Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251
| ||||| ||||| | || |||| | | || | | || |||||||| ||
Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360
Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311
|| ||||||||| || || ||||| || | ||| | || | ||| ||||| || ||
Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420
Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGC 17369
|| || | |||||||| || || || ||| | ||||||||| || |||||||
Sbjct 466421 GCCTCGGGAATTTGAACCTC--GTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGC 466478
Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAA 17429
| || || || ||||| || ||||| | || | |||||| | |||| | |||
Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538
Query 17430 GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489
| |||||| | | ||| || | || ||| ||||| || ||||| ||| |
Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598
Query 17490 CCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549
| || || || || || | | ||||||||||| |||||| ||||| | ||||| |||
Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658
Query 17550 T 17550
|
Sbjct 466659 T 466659
>seq8132
Length=63671
Score = 89.7 bits (98), Expect = 5e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009
|||||| || |||||||||||||||||||| ||||| ||||||||||||| || || ||
Sbjct 51366 CCATTCGAGGATTTTTTTAGCCCAGTACATCCGTAAAAATCCATGCATTTTGCCCTCTCG 51307
Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCA 120036
|| | ||| |||| || ||||||||
Sbjct 51306 AAGTAGTTGGCGTTGAGCCGCGTTCCA 51280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517460651359080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |