Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq11759 190 2e-43 seq8132 89.7 5e-13 >seq11759 Length=791511 Score = 190 bits (210), Expect = 2e-43 Identities = 513/781 (66%), Gaps = 8/781 (1%) Strand=Plus/Plus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || || ||| || || || |||||| || |||||||| Sbjct 465883 GTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCG 465942 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || || || || || | |||| | || || ||| Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAAT--TCGCATTCAATA 466000 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 ||||| ||| | || || | ||| | |||| | | || | | ||| |||| Sbjct 466001 CTGACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGT 466060 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| ||||| || | || ||||||| ||||| || || ||| Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 ||| || | || ||||| || || ||||| | ||| || || | || || || Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||||| || || |||| || ||||| | | || |||||||| | || Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | ||| || |||||| | || |||| ||||| || | | || || |||| Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 | ||||| ||||| | || |||| | | || | | || |||||||| || Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || ||||||||| || || ||||| || | ||| | || | ||| ||||| || || Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGC 17369 || || | |||||||| || || || ||| | ||||||||| || ||||||| Sbjct 466421 GCCTCGGGAATTTGAACCTC--GTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGC 466478 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAA 17429 | || || || ||||| || ||||| | || | |||||| | |||| | ||| Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538 Query 17430 GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489 | |||||| | | ||| || | || ||| ||||| || ||||| ||| | Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598 Query 17490 CCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 | || || || || || | | ||||||||||| |||||| ||||| | ||||| ||| Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658 Query 17550 T 17550 | Sbjct 466659 T 466659 >seq8132 Length=63671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009 |||||| || |||||||||||||||||||| ||||| ||||||||||||| || || || Sbjct 51366 CCATTCGAGGATTTTTTTAGCCCAGTACATCCGTAAAAATCCATGCATTTTGCCCTCTCG 51307 Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCA 120036 || | ||| |||| || |||||||| Sbjct 51306 AAGTAGTTGGCGTTGAGCCGCGTTCCA 51280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517460651359080