Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq11759 192 6e-44 >seq11759 Length=791511 Score = 192 bits (212), Expect = 6e-44 Identities = 519/791 (66%), Gaps = 16/791 (2%) Strand=Plus/Plus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| ||||||| || || ||| || || || |||||| |||||||| Sbjct 465877 CTTATCGTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACAT 465936 Query 16066 TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC 16125 |||| ||||| || || ||||| || || || || | ||| | ||||| ||| Sbjct 465937 TAAGCGACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTC 465996 Query 16126 TATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG 16185 || ||||| || | ||||| || | | |||| | || | | ||| | Sbjct 465997 AATACTGACCGCCTCCCTCATGATGTCATAAACCC---TTTCCGCCGTAGGCTTGTTGAT 466053 Query 16186 G---TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242 |||||||| || || || || || || || || |||||||||| ||||| || Sbjct 466054 AATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAG 466113 Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302 || || ||| || | || ||||| || || ||||| | |||||| || | ||| Sbjct 466114 CTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGC 466173 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362 |||||| || |||||||||| || ||||| | || || || | | || || ||||| Sbjct 466174 AAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTA 466233 Query 16363 CGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 | || | |||||| |||||| | | |||| ||||| || | | ||| Sbjct 466234 GGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGG 466293 Query 16423 CATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATC 16482 || ||||| ||||| ||||||| || |||| ||| | | || ||||| Sbjct 466294 CAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATC 466353 Query 16483 AATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542 ||||| | | ||||||||| || || ||||| || | ||| | || | |||||| || Sbjct 466354 GATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAA 466413 Query 16543 GCATCGAGCCTCCGCTATTTGTACTTCC--ACGTAAAATC---GTTCCGCCAGGTTCTCA 16597 || |||||||| | ||||| || || || ||| || ||| || || ||| Sbjct 466414 ACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTT-----AGATTTTCA 466468 Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657 || ||||| || ||||| || || || || ||||| | | | |||||| | |||| Sbjct 466469 TTAACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCG 466528 Query 16658 TCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTC 16717 || |||| | | ||| || | | ||| || | || ||| ||||| || |||| Sbjct 466529 CCATCATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTC 466588 Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAAT 16777 || || || || || || || || | | ||||||||||| |||||| ||||| | Sbjct 466589 CAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATC 466648 Query 16778 ACGACGTATCT 16788 || ||| |||| Sbjct 466649 ACAACGAATCT 466659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511330457718920