Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 192 6e-44
>seq11759
Length=791511
Score = 192 bits (212), Expect = 6e-44
Identities = 519/791 (66%), Gaps = 16/791 (2%)
Strand=Plus/Plus
Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065
|||| ||| ||||| ||||||| || || ||| || || || |||||| ||||||||
Sbjct 465877 CTTATCGTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACAT 465936
Query 16066 TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC 16125
|||| ||||| || || ||||| || || || || | ||| | ||||| |||
Sbjct 465937 TAAGCGACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTC 465996
Query 16126 TATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG 16185
|| ||||| || | ||||| || | | |||| | || | | ||| |
Sbjct 465997 AATACTGACCGCCTCCCTCATGATGTCATAAACCC---TTTCCGCCGTAGGCTTGTTGAT 466053
Query 16186 G---TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242
|||||||| || || || || || || || || |||||||||| ||||| ||
Sbjct 466054 AATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAG 466113
Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302
|| || ||| || | || ||||| || || ||||| | |||||| || | |||
Sbjct 466114 CTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGC 466173
Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362
|||||| || |||||||||| || ||||| | || || || | | || || |||||
Sbjct 466174 AAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTA 466233
Query 16363 CGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422
| || | |||||| |||||| | | |||| ||||| || | | |||
Sbjct 466234 GGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGG 466293
Query 16423 CATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATC 16482
|| ||||| ||||| ||||||| || |||| ||| | | || |||||
Sbjct 466294 CAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATC 466353
Query 16483 AATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542
||||| | | ||||||||| || || ||||| || | ||| | || | |||||| ||
Sbjct 466354 GATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAA 466413
Query 16543 GCATCGAGCCTCCGCTATTTGTACTTCC--ACGTAAAATC---GTTCCGCCAGGTTCTCA 16597
|| |||||||| | ||||| || || || ||| || ||| || || |||
Sbjct 466414 ACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTT-----AGATTTTCA 466468
Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657
|| ||||| || ||||| || || || || ||||| | | | |||||| | ||||
Sbjct 466469 TTAACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCG 466528
Query 16658 TCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTC 16717
|| |||| | | ||| || | | ||| || | || ||| ||||| || ||||
Sbjct 466529 CCATCATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTC 466588
Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAAT 16777
|| || || || || || || || | | ||||||||||| |||||| ||||| |
Sbjct 466589 CAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATC 466648
Query 16778 ACGACGTATCT 16788
|| ||| ||||
Sbjct 466649 ACAACGAATCT 466659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511330457718920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |