Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 268 1e-66
>seq11759
Length=791511
Score = 268 bits (296), Expect = 1e-66
Identities = 497/723 (69%), Gaps = 15/723 (2%)
Strand=Plus/Plus
Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064
||||||||| || ||||| | ||| || || || | ||||||||||| |||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 24120
|||||| || | || || || || | |||| | | || || | |||| |
Sbjct 466003 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATA--T 466058
Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180
||||||| || | ||||| ||||| ||| || || ||||||| ||| || | || |
Sbjct 466059 GTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCAT 466118
Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240
| ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||
Sbjct 466119 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATG 466178
Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300
| ||||||||||| | ||||| || || || || || | || | || | || |
Sbjct 466179 AACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTG 466238
Query 24301 CGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357
| | | || | |||||| | | ||||||||||||||||| ||||| |||| |
Sbjct 466239 CCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 466298
Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417
| | || || ||||| ||| ||| ||| | ||| || || || ||||| ||||
Sbjct 466299 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCA 466358
Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477
|||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| |
Sbjct 466359 GAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAAC 466418
Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTAT 24535
|||||||| ||| || || || ||||||| ||| | || ||||||||| || ||
Sbjct 466419 GAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 466476
Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595
|| ||||||||||| || || ||||| |||| || || | |||| | |
Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATT 466536
Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655
|| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || ||
Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596
Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| | || || || || | | ||| || ||||| ||||| || || | | ||| ||
Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 466656
Query 24716 TCT 24718
|||
Sbjct 466657 TCT 466659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593624148020880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |