Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11759 268 1e-66 >seq11759 Length=791511 Score = 268 bits (296), Expect = 1e-66 Identities = 497/723 (69%), Gaps = 15/723 (2%) Strand=Plus/Plus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| | ||| || || || | ||||||||||| ||||||| Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002 Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 24120 |||||| || | || || || || | |||| | | || || | |||| | Sbjct 466003 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATA--T 466058 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 ||||||| || | ||||| ||||| ||| || || ||||||| ||| || | || | Sbjct 466059 GTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCAT 466118 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 466119 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATG 466178 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | ||||||||||| | ||||| || || || || || | || | || | || | Sbjct 466179 AACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTG 466238 Query 24301 CGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 | | | || | |||||| | | ||||||||||||||||| ||||| |||| | Sbjct 466239 CCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 466298 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 | | || || ||||| ||| ||| ||| | ||| || || || ||||| |||| Sbjct 466299 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCA 466358 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| | Sbjct 466359 GAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAAC 466418 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTAT 24535 |||||||| ||| || || || ||||||| ||| | || ||||||||| || || Sbjct 466419 GAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 466476 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 || ||||||||||| || || ||||| |||| || || | |||| | | Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATT 466536 Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 || | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || | || || || || | | ||| || ||||| ||||| || || | | ||| || Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 466656 Query 24716 TCT 24718 ||| Sbjct 466657 TCT 466659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593624148020880