Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 208 8e-49
seq1039 122 9e-23
seq7336 107 2e-18
seq7187 95.1 1e-14
>seq11759
Length=791511
Score = 208 bits (230), Expect = 8e-49
Identities = 385/562 (69%), Gaps = 2/562 (0%)
Strand=Plus/Minus
Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653
|| ||||| | ||||| | | ||||| ||||||| || || ||| | |||||
Sbjct 466668 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 466609
Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713
|| || | || || |||||||| || ||||| || || || | ||||| | |||
Sbjct 466608 AAAGCGGTTGCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGAC 466549
Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773
||||| || | || || ||| || || ||||| | | || |||| || |||||
Sbjct 466548 TGGGAAAGCCTTAATGATGGCGAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCA 466489
Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833
||||| || |||||||| || || ||||| | ||| | | ||||| || |
Sbjct 466488 GCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTAACGAGGTTCAAATT 466429
Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893
||||||| || || || || || | || ||||| | || ||| | || || ||||||
Sbjct 466428 CCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATG 466369
Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT-TGTTGAA 116952
|| || || ||||| || ||||| | | ||| | || | || |||| ||
Sbjct 466368 TACTCTCTTCTGATCGATACCTACGTCAAGGATCCAATGGA-ACGCGACTTTCTGTTTAA 466310
Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012
|||||| | ||| ||||||| || |||||||||| |||||||| | ||||| ||
Sbjct 466309 CGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGC 466250
Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072
| | |||| ||| || |||||| |||||||| ||||| ||||| || ||||| ||
Sbjct 466249 AAATAAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATT 466190
Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132
|||||| || || || |||| || ||||||||||| || || |||||||| |||||
Sbjct 466189 CTTTTCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCT 466130
Query 117133 GACTTTCAGCAACGAGCTCATC 117154
|| || || || ||||| |||
Sbjct 466129 CACCTTTAGTAATGAGCTGATC 466108
>seq1039
Length=57342
Score = 122 bits (134), Expect = 9e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || |||||||| ||||| | || || ||| ||| |
Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| || |||| ||||| |||||||| || ||||||||
Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||||| || ||| |||| || | || ||||| |||||||||
Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| || |||||| | || || ||||| |||
Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTG 42889
Score = 114 bits (126), Expect = 1e-20
Identities = 167/233 (72%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745
||||| ||||| || ||||| ||||| ||||| ||||||||| | || || || ||
Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583
Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
|| ||| || | |||| | |||| || || | || || |||||||| || | |
Sbjct 42582 GACTCGATAGAG----AACG-TGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAG 42528
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
||||||||||| | || | ||| || || |||||||| || | |||||| | || |
Sbjct 42527 ACCAGCAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATT 42468
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||| ||||||||| | ||||| || | ||| |||| ||| | || |||
Sbjct 42467 ACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42415
Score = 109 bits (120), Expect = 6e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||||| || || || || |||||| |||| || || | |
Sbjct 49145 ATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 49204
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | || |||| | |||| || |||| ||||| ||||| ||||| |||| ||
Sbjct 49205 GATTCGATTGAGAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || ||||||||| |||| || | ||||| || |||||||||
Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| || |||||| | || || || || ||| | || || | || |||
Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGC 49372
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||||||||| || || || || || || || || || | || || || | |
Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | | |||| ||| |||| ||||| |||||||| || | |||||
Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| || ||||| ||| |||| || | |||||||| ||||||||||
Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || |||||| | || |||||| | ||| | ||| | | |||||
Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCGCCTACGTGGCGG 49599
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||||||||| || || || || || || || || || | || || || | |
Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | | |||| || || | ||||| |||||||| || | ||||||
Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| ||||||||| | ||||| || | ||| |||| ||| | || |||
Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42187
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || || ||||| || || || || || || | || || || | |
Sbjct 41958 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41899
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | | |||| || || | ||||| |||||||| || | ||||||
Sbjct 41898 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 41839
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 41838 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 41779
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| ||||||||| | ||||| || | ||| |||| ||| | || |||
Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41731
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || || ||||| || || || || || || | || || || | |
Sbjct 42186 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42127
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | | |||| || || | ||||| |||||||| || | ||||||
Sbjct 42126 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42067
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 42066 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42007
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| ||||||||| | ||||| || | ||| |||| ||| | || |||
Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41959
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || |||||||| ||||| | || || || |||
Sbjct 32210 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 32151
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | |||| || |||| ||||| |||||||| || | ||||||
Sbjct 32150 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 32091
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||||| || ||| |||| || | || || | |||||||||
Sbjct 32090 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 32031
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||| ||||| |||| || ||||| |||
Sbjct 32030 ATCCAAAAGGAATCCACCCTTCATCTTGTG 32001
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || || || |||||||| ||||| | || || || |||
Sbjct 31755 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 31696
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| || |||| || || || ||||| || | |||||
Sbjct 31695 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 31636
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| ||||| || ||| |||| || | || || | ||||||||
Sbjct 31635 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 31576
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||| ||||| |||| || ||||| |||
Sbjct 31575 CATCCAAAAGGAATCCACCCTTCATCTTGTG 31545
>seq7336
Length=62802
Score = 107 bits (118), Expect = 2e-18
Identities = 157/219 (72%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742
|| || ||||||||| || || || || ||||| || |||||||| ||| | || || ||
Sbjct 18780 CCAAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA 18721
Query 40743 AGCCACCGA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799
| | || || || | |||| | || | |||||| | ||||||||||| || ||
Sbjct 18720 GCCAAGTGATTCCATCGAG--AACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACC 18664
Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859
| || || ||||| || |||| ||| || || ||| | || |||| ||| ||||||
Sbjct 18663 ACCAGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTC 18604
Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||| || || || |||||| | || || ||||| ||
Sbjct 18603 CGACTATAATATTCAAAAGGAGTCAACACTCCATCTTGT 18565
>seq7187
Length=4100
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || |||||||| ||||| | || || || |||
Sbjct 842 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 783
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | |||| || |||| ||||| |||||||| || | ||||||
Sbjct 782 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 723
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||||| || ||| |||| || | || || | |||||||||
Sbjct 722 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 663
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||| ||||| |||| || ||||| |||
Sbjct 662 ATCCAAAAGGAATCCACCCTTCATCTTGTG 633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515134633208560
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