Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11759 208 8e-49 seq1039 122 9e-23 seq7336 107 2e-18 seq7187 95.1 1e-14 >seq11759 Length=791511 Score = 208 bits (230), Expect = 8e-49 Identities = 385/562 (69%), Gaps = 2/562 (0%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 || ||||| | ||||| | | ||||| ||||||| || || ||| | ||||| Sbjct 466668 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 466609 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 || || | || || |||||||| || ||||| || || || | ||||| | ||| Sbjct 466608 AAAGCGGTTGCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGAC 466549 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| || | || || ||| || || ||||| | | || |||| || ||||| Sbjct 466548 TGGGAAAGCCTTAATGATGGCGAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCA 466489 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||||| || |||||||| || || ||||| | ||| | | ||||| || | Sbjct 466488 GCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTAACGAGGTTCAAATT 466429 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 ||||||| || || || || || | || ||||| | || ||| | || || |||||| Sbjct 466428 CCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATG 466369 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT-TGTTGAA 116952 || || || ||||| || ||||| | | ||| | || | || |||| || Sbjct 466368 TACTCTCTTCTGATCGATACCTACGTCAAGGATCCAATGGA-ACGCGACTTTCTGTTTAA 466310 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 |||||| | ||| ||||||| || |||||||||| |||||||| | ||||| || Sbjct 466309 CGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGC 466250 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | |||| ||| || |||||| |||||||| ||||| ||||| || ||||| || Sbjct 466249 AAATAAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATT 466190 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 |||||| || || || |||| || ||||||||||| || || |||||||| ||||| Sbjct 466189 CTTTTCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCT 466130 Query 117133 GACTTTCAGCAACGAGCTCATC 117154 || || || || ||||| ||| Sbjct 466129 CACCTTTAGTAATGAGCTGATC 466108 >seq1039 Length=57342 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || |||||||| ||||| | || || ||| ||| | Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| |||||||| || |||||||| Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||||| || ||| |||| || | || ||||| ||||||||| Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| | || || ||||| ||| Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTG 42889 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745 ||||| ||||| || ||||| ||||| ||||| ||||||||| | || || || || Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583 Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| || | |||| | |||| || || | || || |||||||| || | | Sbjct 42582 GACTCGATAGAG----AACG-TGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAG 42528 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||||||| | || | ||| || || |||||||| || | |||||| | || | Sbjct 42527 ACCAGCAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATT 42468 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| ||||||||| | ||||| || | ||| |||| ||| | || ||| Sbjct 42467 ACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42415 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || || || || |||||| |||| || || | | Sbjct 49145 ATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 49204 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || |||| | |||| || |||| ||||| ||||| ||||| |||| || Sbjct 49205 GATTCGATTGAGAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||| |||| || | ||||| || ||||||||| Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| || |||||| | || || || || ||| | || || | || ||| Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGC 49372 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || || || || || || || || | || || || | | Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| ||| |||| ||||| |||||||| || | ||||| Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| || ||||| ||| |||| || | |||||||| |||||||||| Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || |||||| | || |||||| | ||| | ||| | | ||||| Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCGCCTACGTGGCGG 49599 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || || || || || || || || | || || || | | Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| || || | ||||| |||||||| || | |||||| Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | |||||| | |||||||||| Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | ||||| || | ||| |||| ||| | || ||| Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42187 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || ||||| || || || || || || | || || || | | Sbjct 41958 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41899 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| || || | ||||| |||||||| || | |||||| Sbjct 41898 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 41839 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | |||||| | |||||||||| Sbjct 41838 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 41779 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | ||||| || | ||| |||| ||| | || ||| Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41731 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || ||||| || || || || || || | || || || | | Sbjct 42186 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42127 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| || || | ||||| |||||||| || | |||||| Sbjct 42126 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42067 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | |||||| | |||||||||| Sbjct 42066 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42007 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | ||||| || | ||| |||| ||| | || ||| Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || |||||||| ||||| | || || || ||| Sbjct 32210 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 32151 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| || |||| ||||| |||||||| || | |||||| Sbjct 32150 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 32091 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||||| || ||| |||| || | || || | ||||||||| Sbjct 32090 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 32031 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| ||||| |||| || ||||| ||| Sbjct 32030 ATCCAAAAGGAATCCACCCTTCATCTTGTG 32001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || |||||||| ||||| | || || || ||| Sbjct 31755 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 31696 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| || |||| || || || ||||| || | ||||| Sbjct 31695 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 31636 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||||| || ||| |||| || | || || | |||||||| Sbjct 31635 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 31576 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| ||||| |||| || ||||| ||| Sbjct 31575 CATCCAAAAGGAATCCACCCTTCATCTTGTG 31545 >seq7336 Length=62802 Score = 107 bits (118), Expect = 2e-18 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 || || ||||||||| || || || || ||||| || |||||||| ||| | || || || Sbjct 18780 CCAAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA 18721 Query 40743 AGCCACCGA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 | | || || || | |||| | || | |||||| | ||||||||||| || || Sbjct 18720 GCCAAGTGATTCCATCGAG--AACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACC 18664 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | || || ||||| || |||| ||| || || ||| | || |||| ||| |||||| Sbjct 18663 ACCAGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTC 18604 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || || |||||| | || || ||||| || Sbjct 18603 CGACTATAATATTCAAAAGGAGTCAACACTCCATCTTGT 18565 >seq7187 Length=4100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || |||||||| ||||| | || || || ||| Sbjct 842 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 783 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| || |||| ||||| |||||||| || | |||||| Sbjct 782 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 723 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||||| || ||| |||| || | || || | ||||||||| Sbjct 722 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 663 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| ||||| |||| || ||||| ||| Sbjct 662 ATCCAAAAGGAATCCACCCTTCATCTTGTG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515134633208560