Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 138 2e-27
seq1039 100 4e-16
seq7000 95.1 2e-14
>seq7336
Length=62802
Score = 138 bits (152), Expect = 2e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| |||
Sbjct 18774 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 18715
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||| | || || ||||| ||||| ||||| ||||| || |||||||| |||||
Sbjct 18714 TGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 18655
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| ||||||| || || || || || |||||||| | || || | || |||||
Sbjct 18654 ACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAA 18595
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAA 124771
||||||||| || ||||| | ||| | ||| || | ||||||| || || ||
Sbjct 18594 TATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAA 18541
>seq1039
Length=57342
Score = 100 bits (110), Expect = 4e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | ||||| ||||| |||||||| || || | ||| | || | |
Sbjct 31755 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 31696
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||| | || ||| | || ||| ||||||||||| ||||| || ||||| || ||
Sbjct 31695 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 31636
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || ||||| ||||| || || || ||| |||| ||||| || || ||
Sbjct 31635 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 31576
Query 124718 TATTCAAAAAGAATCAAC 124735
|| ||||| ||||| ||
Sbjct 31575 CATCCAAAAGGAATCCAC 31558
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | ||||| || || || || ||||| || | ||| | || | | |
Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||| ||| | || ||| || ||||| || || || || ||||| || ||
Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || || |||||||| || |||||||| |||| || || || || ||
Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || || || || | || ||||| | ||||| || ||||| ||
Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 42185
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | ||||| || || || || ||||| || | ||| | || | | |
Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| | || ||| | || || |||||||| || || || || ||||| || |||
Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || ||||| || || || || || ||| |||| || | || || ||
Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|||||||| || |||||| |||||||||| | || |||| || |||
Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCGCCTACGTGGCGGT 49600
>seq7000
Length=1252665
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||||||||| ||| | ||| | ||| |
Sbjct 319803 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCC 319744
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||| | ||| ||| | || || ||||| || || || || || || || || |||
Sbjct 319743 GATTCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAA 319684
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | ||||||||||| || || ||||| |||||| | || | ||| ||||| |||
Sbjct 319683 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 319624
Query 124719 ATTCAAAAAGAATCAAC 124735
||||| || || |||||
Sbjct 319623 ATTCAGAAGGAGTCAAC 319607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755332001340800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |