Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1039 125 8e-24 seq7336 102 9e-17 seq8580 86.0 7e-12 >seq1039 Length=57342 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| |||| ||| ||||| | || || | |||||| || || || Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || |||||||| | || | || |||||||| | ||| | || | || | Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 43025 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||||| | |||||| || | |||||| |||||||| ||||| ||||| | Sbjct 43026 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCA 43085 Query 43171 CAAAGATTTGCATTTTTACGC 43191 |||| |||||||| | |||| Sbjct 43086 CAAAAATTTGCATCGTAACGC 43106 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || || |||| ||||| || |||| || | ||||||||||||||| Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||| || || | || | || |||||| ||| ||| || || | | Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 42859 AAAGATTTGCAT 42870 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||||| |||||| || | || |||||| ||||| ||||| || | || || || Sbjct 41741 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 41800 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || ||||||||||| || ||||| || | ||| |||||||| | || | || |||| Sbjct 41801 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 41860 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| || || | || | | | ||| |||| ||||| || | ||| Sbjct 41861 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 41920 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||||||||| ||||| || ||||| Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||||| |||||| || | || |||||| ||||| ||||| || | || || || Sbjct 41969 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42028 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || ||||||||||| || ||||| || | ||| |||||||| | || | || |||| Sbjct 42029 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42088 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| || || | || | | | ||| |||| ||||| || | ||| Sbjct 42089 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42148 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||||||||| ||||| || ||||| Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||||| || |||||||||||| ||||| || | ||| || || | || || Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | |||||| ||||| || || | ||| || ||||| | || | || |||||||| | | Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGT-CTT 49464 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | |||| || | || | | || ||| |||| ||||| || | ||| || || | Sbjct 49463 GAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCT 49404 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||| || || |||||||| Sbjct 49403 TCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||||| |||||| || | || |||||| ||||| ||||| || | || || || Sbjct 42197 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42256 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || ||||||||||| || ||||| || | ||| |||||||| | || | || |||| Sbjct 42257 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42316 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| || || | || | | | ||| |||| ||||| || | ||| Sbjct 42317 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42376 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || || ||||| || || |||||||| Sbjct 42377 ATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| ||||| || | || || | |||||| ||||| || Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | ||| || ||||| | || | || ||||||||| ||| | || | || | | Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATT 41658 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||| |||| ||||| || | ||| || || || || ||||||||||| || Sbjct 41659 CTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCAC 41718 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 41719 AAATATCTGCAT 41730 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| || | ||| |||||||||||| ||||| || | ||||| || | Sbjct 49360 ACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACC 49301 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||| || ||||| || || | |||||||| || | || | | |||||| Sbjct 49300 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTT 49241 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | || | || | | || || || | || || |||| |||| Sbjct 49240 GT-CTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGA 49182 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || |||||||| || ||||||||||| Sbjct 49181 TAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 >seq7336 Length=62802 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| || || | || |||||| |||| |||| ||||||||| ||||| Sbjct 18582 CTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAA 18641 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || || || || | || | | ||| ||||| ||||||| ||| | | Sbjct 18642 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 18701 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | || || || | || |||||||| || || || ||||| || Sbjct 18702 CTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 18761 Query 43172 AAAGATTTGCATTTTT 43187 ||| ||||||||| || Sbjct 18762 AAAAATTTGCATTATT 18777 >seq8580 Length=44318 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 31714 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 31655 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 31654 TACTATCGCGGA 31643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571723743288680