Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 125 8e-24
seq7336 102 9e-17
seq8580 86.0 7e-12
>seq1039
Length=57342
Score = 125 bits (138), Expect = 8e-24
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||| ||||| |||| ||| ||||| | || || | |||||| || || ||
Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || || |||||||| | || | || |||||||| | ||| | || | || |
Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 43025
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
|| | | |||||||| | |||||| || | |||||| |||||||| ||||| ||||| |
Sbjct 43026 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCA 43085
Query 43171 CAAAGATTTGCATTTTTACGC 43191
|||| |||||||| | ||||
Sbjct 43086 CAAAAATTTGCATCGTAACGC 43106
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||| || || |||| ||||| || |||| || | |||||||||||||||
Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | ||||| || || | || | || |||||| ||| ||| || || | |
Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858
Query 43172 AAAGATTTGCAT 43183
||||||||||||
Sbjct 42859 AAAGATTTGCAT 42870
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 41741 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 41800
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
| || ||||||||||| || ||||| || | ||| |||||||| | || | || ||||
Sbjct 41801 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 41860
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 41861 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 41920
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || ||||||||||| ||||| || |||||
Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 41969 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42028
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
| || ||||||||||| || ||||| || | ||| |||||||| | || | || ||||
Sbjct 42029 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42088
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 42089 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42148
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || ||||||||||| ||||| || |||||
Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 104 bits (114), Expect = 3e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||||||||| || |||||||||||| ||||| || | ||| || || | || ||
Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
| |||||| ||||| || || | ||| || ||||| | || | || |||||||| | |
Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGT-CTT 49464
Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
|| | |||| || | || | | || ||| |||| ||||| || | ||| || || |
Sbjct 49463 GAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCT 49404
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || ||||| || || ||||||||
Sbjct 49403 TCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 42197 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42256
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
| || ||||||||||| || ||||| || | ||| |||||||| | || | || ||||
Sbjct 42257 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42316
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 42317 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42376
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || || || ||||| || || ||||||||
Sbjct 42377 ATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || |||||||||| ||||| || | || || | |||||| ||||| ||
Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111
|| | ||| || ||||| | || | || ||||||||| ||| | || | || | |
Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATT 41658
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | | ||| |||| ||||| || | ||| || || || || ||||||||||| ||
Sbjct 41659 CTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCAC 41718
Query 43172 AAAGATTTGCAT 43183
||| || |||||
Sbjct 41719 AAATATCTGCAT 41730
Score = 82.4 bits (90), Expect = 9e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| || | ||| |||||||||||| ||||| || | ||||| || |
Sbjct 49360 ACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACC 49301
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | ||| || ||||| || || | |||||||| || | || | | ||||||
Sbjct 49300 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTT 49241
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|| | ||| | || | || | || | | || || || | || || |||| ||||
Sbjct 49240 GT-CTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGA 49182
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || || |||||||| || |||||||||||
Sbjct 49181 TAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
>seq7336
Length=62802
Score = 102 bits (112), Expect = 9e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||||||||||||||| || || | || |||||| |||| |||| ||||||||| |||||
Sbjct 18582 CTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAA 18641
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || || || || || | || | | ||| ||||| ||||||| ||| | |
Sbjct 18642 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 18701
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | | || || | || || || | || |||||||| || || || ||||| ||
Sbjct 18702 CTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 18761
Query 43172 AAAGATTTGCATTTTT 43187
||| ||||||||| ||
Sbjct 18762 AAAAATTTGCATTATT 18777
>seq8580
Length=44318
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 31714 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 31655
Query 60126 TACTACCGAGGA 60137
||||| || |||
Sbjct 31654 TACTATCGCGGA 31643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571723743288680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |