Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 161 9e-35
>seq11759
Length=791511
Score = 161 bits (178), Expect = 9e-35
Identities = 506/779 (65%), Gaps = 6/779 (1%)
Strand=Plus/Plus
Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099
|||||| |||||| ||| | || || ||| || || || ||||||||| ||||
Sbjct 465878 TTATCGTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATT 465937
Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159
|| ||| ||||| || || | | |||||| | || ||||| | ||| | |||
Sbjct 465938 AAGCGACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCA 465997
Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT--TAATA 16217
||| | ||||| || | || || || || || || | || ||| || | |||
Sbjct 465998 ATACTGACCGCCTCCCTCATGATGTCA--TAA-ACCCTTTCCGCCGTAGGCTTGTTGATA 466054
Query 16218 AG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276
| |||||||| || | || |||||||| || | |||||||| | ||| || | |
Sbjct 466055 ATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGC 466114
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||| || || || ||||| || || || || || | ||| || || | |||
Sbjct 466115 TCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA 466174
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
||||||||||||||||||| |||||||| || || || || |||| ||||| ||||
Sbjct 466175 AATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAG 466234
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | |||||| || | ||||| | ||||||| || || | |||||| |
Sbjct 466235 GGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGC 466294
Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516
| | | || || ||||| | | | | ||| | ||| | || |||||
Sbjct 466295 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCG 466354
Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576
|| || | | |||||||| |||||||| || || | || | || | ||||||||
Sbjct 466355 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAA 466414
Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636
|| | ||| |||| ||||| || || |||| | | || ||||| |||||
Sbjct 466415 CAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACG 466474
Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696
|| ||||| || ||||| || || || | | | ||| || | |||| |||
Sbjct 466475 ATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCA 466534
Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756
||| || |||||||| | ||| || | || ||| || || || || ||||| |||
Sbjct 466535 TTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAA 466594
Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815
|| ||||| || || || || | | ||| || || | ||| || || | ||||||
Sbjct 466595 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 466653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462436084436600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |