Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11759 161 9e-35 >seq11759 Length=791511 Score = 161 bits (178), Expect = 9e-35 Identities = 506/779 (65%), Gaps = 6/779 (1%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 |||||| |||||| ||| | || || ||| || || || ||||||||| |||| Sbjct 465878 TTATCGTATCCCAGCTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATT 465937 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || ||| ||||| || || | | |||||| | || ||||| | ||| | ||| Sbjct 465938 AAGCGACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCA 465997 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT--TAATA 16217 ||| | ||||| || | || || || || || || | || ||| || | ||| Sbjct 465998 ATACTGACCGCCTCCCTCATGATGTCA--TAA-ACCCTTTCCGCCGTAGGCTTGTTGATA 466054 Query 16218 AG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | |||||||| || | || |||||||| || | |||||||| | ||| || | | Sbjct 466055 ATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGC 466114 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || || ||||| || || || || || | ||| || || | ||| Sbjct 466115 TCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA 466174 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 ||||||||||||||||||| |||||||| || || || || |||| ||||| |||| Sbjct 466175 AATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAG 466234 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| || | ||||| | ||||||| || || | |||||| | Sbjct 466235 GGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGC 466294 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 | | | || || ||||| | | | | ||| | ||| | || ||||| Sbjct 466295 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCG 466354 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576 || || | | |||||||| |||||||| || || | || | || | |||||||| Sbjct 466355 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAA 466414 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | ||| |||| ||||| || || |||| | | || ||||| ||||| Sbjct 466415 CAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACG 466474 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || ||||| || ||||| || || || | | | ||| || | |||| ||| Sbjct 466475 ATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCA 466534 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 ||| || |||||||| | ||| || | || ||| || || || || ||||| ||| Sbjct 466535 TTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAA 466594 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815 || ||||| || || || || | | ||| || || | ||| || || | |||||| Sbjct 466595 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 466653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462436084436600