Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1039 125 6e-24 >seq1039 Length=57342 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| Sbjct 42187 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42246 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || || || || ||||| ||||| ||||| || || ||||| || || Sbjct 42247 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42306 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| || || ||| || | | | ||| | |||||| Sbjct 42307 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42366 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| ||||| || ||||| |||||||| || ||||||||| Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 42415 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || |||||| ||||||||||||||| ||| |||| | || ||| Sbjct 49581 ACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 49522 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || ||||| || |||||||| || || | ||||||||||| | Sbjct 49521 AACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 49462 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | ||| | ||||||||||| ||||| ||||| Sbjct 49461 ATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTC 49402 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| || ||||||||| Sbjct 49401 CCAGTCAGGGTCTTCACGAATATTTGCATG 49372 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| Sbjct 41731 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 41790 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || || || || ||||| ||||| ||||| || || ||||| || || Sbjct 41791 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 41850 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| || || ||| || | | | ||| | |||||| Sbjct 41851 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41910 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| ||||| || || || ||||||||||| || |||||| Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| Sbjct 41959 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42018 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || || || || ||||| ||||| ||||| || || ||||| || || Sbjct 42019 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42078 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| || || ||| || | | | ||| | |||||| Sbjct 42079 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42138 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| ||||| || || || ||||||||||| || |||||| Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| |||||||||||||||||| || Sbjct 42415 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGA 42474 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || ||||| || ||||| ||||| ||||| || || ||||| || || Sbjct 42475 CAAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGG 42534 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| || || || ||| || | | | ||| | |||||| Sbjct 42535 AATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCAC 42594 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| || || || || ||||| || ||||| Sbjct 42595 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||| ||||||||||||||| || |||| | || ||| Sbjct 49353 ACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 49294 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || ||||| ||||| || || || || | |||||||||||| | Sbjct 49293 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGA 49234 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | || | | ||| ||||| | ||| || ||||| Sbjct 49233 ATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 49174 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || |||||||| |||||||||||| || Sbjct 49173 CCGGTAAGCGTCTTCACGAAGATTTGCATGATG 49141 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||| || || ||| | || |||| || || || || || Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || |||||||| || || | ||||||||||| ||| || ||| || | Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTC 41659 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||| | ||||||||||| ||||| ||||| || || || ||||||||| Sbjct 41660 TCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACA 41719 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 41720 AATATCTGCATG 41731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||||||||| ||| ||| | || |||| || || || || || Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | ||||||||||| ||| || ||| || Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 43026 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || || || ||||| || ||||||||||| Sbjct 43027 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCAC 43086 Query 45325 AAAGATTTGCAT 45336 ||| |||||||| Sbjct 43087 AAAAATTTGCAT 43098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395011974510751