Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq11759 168 6e-37 >seq11759 Length=791511 Score = 168 bits (186), Expect = 6e-37 Identities = 506/770 (66%), Gaps = 16/770 (2%) Strand=Plus/Plus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 |||| || ||| |||| |||| ||||| ||| ||||||| ||||||||| || || Sbjct 465899 AGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 465958 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 465959 AGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 466018 Query 14150 ATAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 14205 || || |||| | || | | ||| | || | | ||||||||||| | || Sbjct 466019 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGTTTAAAAATAAGGCA 466074 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 |||||||| || ||||| || |||| ||| || || || || ||| || | || Sbjct 466075 TGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCC 466134 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | || || || || | ||| || || | ||| ||||| || |||||||||| Sbjct 466135 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATAC 466194 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 || ||||| ||||| ||||| | | || || | | | ||| ||||| || | || Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAAT 466254 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| | ||||| || | || || || | | || |||| ||| || ||||| Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314 Query 14446 TA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14502 | || || | ||| || | |||| | ||| ||||| || || ||| | ||||| Sbjct 466315 CAGAAAGTCGCGTTCCATTGGATCCTTG--ACGTAGGTATCGATCAG-AAGAGAGTACAT 466371 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||||| || |||||||| | || | || | ||||||||||| | ||| || | Sbjct 466372 TTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 466431 Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| ||||| | | ||||| | | | |||||||||||| || |||||||| |||| Sbjct 466432 TTGAACCTCGTTACAAAAAT-TCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTG 466490 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 | || || ||||| | | ||| |||| | || ||| | || ||| ||| | Sbjct 466491 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGT 466550 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | | | |||||| | ||||| ||||| ||||| ||||| ||| ||||| ||||| | Sbjct 466551 CAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCT 466610 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 | || | |||| || || | ||| || || | || || |||||| Sbjct 466611 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTT 466660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482266428999080