Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 168 6e-37
>seq11759
Length=791511
Score = 168 bits (186), Expect = 6e-37
Identities = 506/770 (66%), Gaps = 16/770 (2%)
Strand=Plus/Plus
Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089
|||| || ||| |||| |||| ||||| ||| ||||||| ||||||||| || ||
Sbjct 465899 AGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 465958
Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149
|| | ||||| | | || | |||||| ||| ||| || ||||| | ||
Sbjct 465959 AGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 466018
Query 14150 ATAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 14205
|| || |||| | || | | ||| | || | | ||||||||||| | ||
Sbjct 466019 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGTTTAAAAATAAGGCA 466074
Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265
|||||||| || ||||| || |||| ||| || || || || ||| || | ||
Sbjct 466075 TGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCC 466134
Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325
||||| | || || || || | ||| || || | ||| ||||| || ||||||||||
Sbjct 466135 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATAC 466194
Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385
|| ||||| ||||| ||||| | | || || | | | ||| ||||| || | ||
Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAAT 466254
Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445
||| | ||||| || | || || || | | || |||| ||| || |||||
Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314
Query 14446 TA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14502
| || || | ||| || | |||| | ||| ||||| || || ||| | |||||
Sbjct 466315 CAGAAAGTCGCGTTCCATTGGATCCTTG--ACGTAGGTATCGATCAG-AAGAGAGTACAT 466371
Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562
|||||| || |||||||| | || | || | ||||||||||| | ||| || |
Sbjct 466372 TTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 466431
Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621
||| ||||| | | ||||| | | | |||||||||||| || |||||||| ||||
Sbjct 466432 TTGAACCTCGTTACAAAAAT-TCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTG 466490
Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681
| || || ||||| | | ||| |||| | || ||| | || ||| ||| |
Sbjct 466491 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGT 466550
Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741
| | | |||||| | ||||| ||||| ||||| ||||| ||| ||||| ||||| |
Sbjct 466551 CAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCT 466610
Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791
| || | |||| || || | ||| || || | || || ||||||
Sbjct 466611 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTT 466660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482266428999080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |