Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 107 1e-18
seq7187 95.1 9e-15
>seq1039
Length=57342
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || |||| ||| || | || || ||||| || ||||||||||||||||| | |
Sbjct 42872 CCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAC 42931
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||| || || |||||| ||||||| | ||| || ||| ||
Sbjct 42932 AGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGA 42991
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || ||| | ||| || | ||| ||||| | ||| ||
Sbjct 42992 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 43051
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||| |||||||||| | || || ||||||||||||||
Sbjct 43052 TCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| || | ||||| || ||||| ||||| ||||||||||| | |
Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||| || || |||||| |||| || | ||| || || ||
Sbjct 31588 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 31647
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||||||| ||| | ||| || | | | | |||| ||||||
Sbjct 31648 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACC 31707
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||||| |||||||||| | || || || || || ||||||
Sbjct 31708 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| |||| |||||||||||| || |||||||||||||||||||
Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||| |||||||| ||| |||| | | || |||||| ||
Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || ||||| || ||| | ||| || | ||| | |||| |||||
Sbjct 49251 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 49192
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| | || ||||| | || || || || ||||||||
Sbjct 49191 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | ||| |||| || || ||||| || ||||||||||||||||||| |
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||| || ||||| ||| |||| | || |||||| || ||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || ||| | | ||| || | | | | ||||| |||||
Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || || | || || |||| || || || || ||||||||
Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || ||||| ||||| ||||||||||| | || ||| || ||||||||| ||
Sbjct 32008 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGC 32067
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| |||||| |||| || | ||| || || || | ||| ||||| || ||| |
Sbjct 32068 TTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTC 32127
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | | | | |||| |||||| ||| | ||||| ||||||| |||
Sbjct 32128 GCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTTTTGCCAGTC 32187
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
|| || || || || || |||||
Sbjct 32188 AACGTCTTCACGAAGATCTGCAT 32210
>seq7187
Length=4100
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| || | ||||| || ||||| ||||| ||||||||||| | |
Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 675
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||| || || |||||| |||| || | ||| || || ||
Sbjct 676 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 735
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || ||| | ||| || | | | | |||| |||||| |
Sbjct 736 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 795
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||| ||||||| ||||| || || || || || |||||
Sbjct 796 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379283292038595
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |