Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 226 3e-54
seq1039 111 1e-19
>seq1473
Length=538379
Score = 226 bits (250), Expect = 3e-54
Identities = 376/538 (70%), Gaps = 4/538 (1%)
Strand=Plus/Minus
Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
||||| || |||| || ||||| || | ||| || ||| ||| || || || |||||
Sbjct 274508 TCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGA 274449
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
| |||||| ||| |||||||| || |||| ||| | || || |||| ||||||
Sbjct 274448 ATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCAT 274389
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521
|| ||||| || | |||||| || || |||| || ||||| ||||||||||| |||||
Sbjct 274388 GGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGA 274329
Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581
|| ||| ||||| | || | |||||||| || |||||||||||| | || ||
Sbjct 274328 GCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCA 274269
Query 23582 GCCACACTCGAACCTTTTGC-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640
|| | | || | | |||| ||| | | |||||| | || ||| || || || |
Sbjct 274268 GCGATAAACGTA-TTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTT 274210
Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700
|||||| |||| || |||||||| || ||||| || || |||||||| ||||| |||||
Sbjct 274209 TTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTT 274150
Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760
| | | ||| ||||| ||||| || | | ||||| | || || || ||
Sbjct 274149 CATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGT 274090
Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819
|| |||||| | || | | ||| ||||||||||| || || || || || || |
Sbjct 274089 GGGTGAGGCGTGAATCAACCA-CTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGT 274031
Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877
| | || || || || ||||| || | ||||||||| | |||||| ||||| |||||
Sbjct 274030 CCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
>seq1039
Length=57342
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || |||||||| ||||| | || || ||||| |
Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || |||||||| ||| | || || ||||||
Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || || || || || || || ||||||||||| | ||| || || || |||
Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || || || ||||| || ||| |||| | || ||||
Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGGTA 42870
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || || || || |||||| |||| ||||| ||
Sbjct 49144 CATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 49203
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | || | || || | || |||||||| || | || || || ||
Sbjct 49204 TGATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| | || || |||||||||||||||||||| | ||| | ||| || ||
Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||| || || || ||||| ||||| ||| | ||| | || ||
Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGG 49371
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||||| || ||||| || || || | || ||||||||
Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | || | || || || || ||| ||||| ||| | || || || ||
Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || |||||||| || |||||||||||| | ||| | || ||||||
Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || || ||||| || || ||| |||| | || ||||
Sbjct 42690 ATTCAAAAGGAGTCAACGCTTCACCTCGTGCTTCGACTCCGTGGTGGTA 42642
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| ||||| || || || || || | || || || |||
Sbjct 49372 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 49431
Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
||| | || | || || || ||| | | ||||||| ||| | || || ||||
Sbjct 49432 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAG-ACAAGGAGGGCATTCCACCAGACC 49490
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
| || || | || || |||||||| ||||||||||| | || || ||| || |
Sbjct 49491 AACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACA 49550
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423
|||||||||| || || ||||| ||| |||| ||| | || | |||||| ||
Sbjct 49551 ACATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCGCCTACGTGGCGGTTGA 49603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445693233017520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |