Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1473 226 3e-54 seq1039 111 1e-19 >seq1473 Length=538379 Score = 226 bits (250), Expect = 3e-54 Identities = 376/538 (70%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || |||| || ||||| || | ||| || ||| ||| || || || ||||| Sbjct 274508 TCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGA 274449 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | |||||| ||| |||||||| || |||| ||| | || || |||| |||||| Sbjct 274448 ATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCAT 274389 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || ||||| || | |||||| || || |||| || ||||| ||||||||||| ||||| Sbjct 274388 GGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGA 274329 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||| ||||| | || | |||||||| || |||||||||||| | || || Sbjct 274328 GCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCA 274269 Query 23582 GCCACACTCGAACCTTTTGC-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || | | |||| ||| | | |||||| | || ||| || || || | Sbjct 274268 GCGATAAACGTA-TTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTT 274210 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 |||||| |||| || |||||||| || ||||| || || |||||||| ||||| ||||| Sbjct 274209 TTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTT 274150 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | ||| ||||| ||||| || | | ||||| | || || || || Sbjct 274149 CATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGT 274090 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 || |||||| | || | | ||| ||||||||||| || || || || || || | Sbjct 274089 GGGTGAGGCGTGAATCAACCA-CTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGT 274031 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 | | || || || || ||||| || | ||||||||| | |||||| ||||| ||||| Sbjct 274030 CCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973 >seq1039 Length=57342 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || |||||||| ||||| | || || ||||| | Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || || |||||| Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||||||||||| | ||| || || || ||| Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || || ||||| || ||| |||| | || |||| Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGGTA 42870 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || |||||| |||| ||||| || Sbjct 49144 CATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 49203 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | || | || || | || |||||||| || | || || || || Sbjct 49204 TGATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || |||||||||||||||||||| | ||| | ||| || || Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || ||||| ||||| ||| | ||| | || || Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGG 49371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || ||||| || || || | || |||||||| Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | || | || || || || ||| ||||| ||| | || || || || Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || |||||||| || |||||||||||| | ||| | || |||||| Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || ||||| || || ||| |||| | || |||| Sbjct 42690 ATTCAAAAGGAGTCAACGCTTCACCTCGTGCTTCGACTCCGTGGTGGTA 42642 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || || || || | || || || ||| Sbjct 49372 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 49431 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | || | || || || ||| | | ||||||| ||| | || || |||| Sbjct 49432 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAG-ACAAGGAGGGCATTCCACCAGACC 49490 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 | || || | || || |||||||| ||||||||||| | || || ||| || | Sbjct 49491 AACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACA 49550 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 |||||||||| || || ||||| ||| |||| ||| | || | |||||| || Sbjct 49551 ACATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCGCCTACGTGGCGGTTGA 49603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445693233017520