Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 300 2e-76
seq1473 192 7e-44
>seq11759
Length=791511
Score = 300 bits (332), Expect = 2e-76
Identities = 519/748 (69%), Gaps = 11/748 (1%)
Strand=Plus/Plus
Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511
||||||||| || || || | ||| || || || | ||||||||||| ||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG-TGGATGTAATAA-ATGT 33569
||||| | | || || ||| |||| | | || | | || |||| ||||
Sbjct 466003 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG--ATAATATGT 466060
Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629
||||| || | ||||| ||||| ||| || || ||||||| ||| || | || |||
Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120
Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689
||| ||||| || ||||| || |||||||| || ||||| || |||||||| |||||
Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180
Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749
|| |||||||| | ||||| || ||||| || || | || | ||| | || ||
Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240
Query 33750 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806
| | || | |||||| | | ||||||||||||||||| ||||| |||| ||||
Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300
Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866
| ||||| ||||| ||| ||| ||| | ||| || || || |||||||||| |
Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360
Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926
||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | |
Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420
Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTC 33984
||||||| ||| || || || ||||||| ||| | || ||||||||| || || |
Sbjct 466421 GCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGC 466478
Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 34044
||||||||||||| || || ||||| |||| || || | |||| | | |
Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538
Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104
| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || |
Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598
Query 34105 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164
| | || || || || | | ||| || ||||| |||||||| || | | ||| ||||
Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658
Query 34165 TATTTGGATTTGGTGCAAGGATAGGTTC 34192
| ||||| || |||| ||||||||
Sbjct 466659 TTCGGGGATTAGGAACAAGTATAGGTTC 466686
>seq1473
Length=538379
Score = 192 bits (212), Expect = 7e-44
Identities = 367/536 (68%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
||||| ||||| || ||||| |||| |||||| || | || ||||| | | | |
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386
||||| || || ||||| | || | ||| || | ||| | |||||| |||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446
|| | || ||||| | | || || |||||||| ||||||||||| | || | ||||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506
||| | || | || | | ||| || | || |||||| || |||||||| || | |
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 63507 ATATAGCCTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563
||| | | | || || || || | | ||||| |||| || || || || ||
Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209
Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623
|| ||||| | ||| ||| |||| | ||||||||| || || || || || || || ||
Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149
Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683
|| |||| | ||||||||| ||||| || | || || || |||||||| | ||
Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089
Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743
|| || ||||| | ||||| |||||||| | |||||| || ||||||||||| | |||
Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029
Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799
| ||| |||||| |||| | ||| ||||| ||||||| |||||| || ||
Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629714223313680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |