Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 181 1e-40
seq1473 138 1e-27
>seq11759
Length=791511
Score = 181 bits (200), Expect = 1e-40
Identities = 509/776 (66%), Gaps = 19/776 (2%)
Strand=Plus/Plus
Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508
||| || | || || ||| || ||||| |||||||||| ||||||| | |||||||||
Sbjct 465892 CTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCAT 465951
Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568
|| |||||||| || || | || |||| | ||| || ||| ||| | ||||| ||
Sbjct 465952 GCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTC 466011
Query 11569 AATGATTATCGACGTTATAA---CTT----CCTTAGA-TGGTGGATGTAATAAATGTTTA 11620
| || || || |||| ||| || ||| | || ||| |||| ||||||
Sbjct 466012 CCTCATGAT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGAT--AATA--TGTTTA 466063
Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680
|| || | || |||||||| || | |||||||||| ||| || || |||||| |
Sbjct 466064 AAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTA 466123
Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740
|| || | || ||||| | || || || || | ||| || || | |||||||||||||
Sbjct 466124 AAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCA 466183
Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797
|||||||||| || || || || || || || || | | || | || | ||||
Sbjct 466184 GAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTT 466243
Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857
|| | | ||||| | |||||||| || ||||| || || || ||||
Sbjct 466244 TTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGA 466303
Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917
|| |||||||| | | ||| || ||| | || || ||||| || | | |
Sbjct 466304 ATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGA 466363
Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977
|||||||| |||||||| ||||| | || | ||| | |||||| ||||| || |||
Sbjct 466364 GAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCC 466423
Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037
|| | | || || || | |||| | | || ||| ||||| || || ||||||
Sbjct 466424 TCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCA 466483
Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097
|| | ||| || || || | | || || |||| |||| | | | | | |
Sbjct 466484 CTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTT 466543
Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157
||||| ||| | ||| || | || ||| ||||| ||||| ||||| ||| || ||
Sbjct 466544 TCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACC 466603
Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
| || || || | | ||| |||||||| || | || || | | |||||| ||
Sbjct 466604 GCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 466659
>seq1473
Length=538379
Score = 138 bits (152), Expect = 1e-27
Identities = 313/469 (67%), Gaps = 4/469 (1%)
Strand=Plus/Minus
Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187
||||||||||| | ||| || | | || || |||| ||| | |||||||||| | |
Sbjct 274394 TGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACA 274335
Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247
|| | | | ||| | || | | | | ||| ||||| | ||| || || | || ||
Sbjct 274334 TAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTG 274275
Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305
| || | ||| | ||| ||| ||| || | | || || | || || ||||
Sbjct 274274 GTTCCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGA--CCGATCCCAC 274217
Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365
| || | ||| || || | || |||||||| | ||| ||| ||||||| || |||||||
Sbjct 274216 CCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGT 274157
Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425
| || || |||| || | |||||| || ||||| ||||| | || || || || ||||
Sbjct 274156 CGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAA 274097
Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485
| | || || || || || || ||||| ||||| |||| |||||| || || ||
Sbjct 274096 AAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAG 274037
Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545
|| | || | ||| | || |||||||||| || || | ||| | ||| | || || |
Sbjct 274036 CAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCC 273977
Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594
| || ||||| || | || ||||||||||| ||||||||
Sbjct 273976 TCTCCCAGATTTTCCCATCCCTACGGAGAAGATACGATTTCTCTAATGT 273928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468447897510640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |