Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11759 181 1e-40 seq1473 138 1e-27 >seq11759 Length=791511 Score = 181 bits (200), Expect = 1e-40 Identities = 509/776 (66%), Gaps = 19/776 (2%) Strand=Plus/Plus Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| || | || || ||| || ||||| |||||||||| ||||||| | ||||||||| Sbjct 465892 CTCCGTAAGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCAT 465951 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || |||||||| || || | || |||| | ||| || ||| ||| | ||||| || Sbjct 465952 GCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTC 466011 Query 11569 AATGATTATCGACGTTATAA---CTT----CCTTAGA-TGGTGGATGTAATAAATGTTTA 11620 | || || || |||| ||| || ||| | || ||| |||| |||||| Sbjct 466012 CCTCATGAT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGAT--AATA--TGTTTA 466063 Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 || || | || |||||||| || | |||||||||| ||| || || |||||| | Sbjct 466064 AAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTA 466123 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || | || ||||| | || || || || | ||| || || | ||||||||||||| Sbjct 466124 AAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCA 466183 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797 |||||||||| || || || || || || || || | | || | || | |||| Sbjct 466184 GAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTT 466243 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 || | | ||||| | |||||||| || ||||| || || || |||| Sbjct 466244 TTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGA 466303 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || |||||||| | | ||| || ||| | || || ||||| || | | | Sbjct 466304 ATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGA 466363 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 |||||||| |||||||| ||||| | || | ||| | |||||| ||||| || ||| Sbjct 466364 GAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCC 466423 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 || | | || || || | |||| | | || ||| ||||| || || |||||| Sbjct 466424 TCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCA 466483 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 || | ||| || || || | | || || |||| |||| | | | | | | Sbjct 466484 CTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTT 466543 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||||| ||| | ||| || | || ||| ||||| ||||| ||||| ||| || || Sbjct 466544 TCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACC 466603 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | || || || | | ||| |||||||| || | || || | | |||||| || Sbjct 466604 GCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 466659 >seq1473 Length=538379 Score = 138 bits (152), Expect = 1e-27 Identities = 313/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||||||||| | ||| || | | || || |||| ||| | |||||||||| | | Sbjct 274394 TGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACA 274335 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | ||| | || | | | | ||| ||||| | ||| || || | || || Sbjct 274334 TAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTG 274275 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305 | || | ||| | ||| ||| ||| || | | || || | || || |||| Sbjct 274274 GTTCCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGA--CCGATCCCAC 274217 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | || | ||| || || | || |||||||| | ||| ||| ||||||| || ||||||| Sbjct 274216 CCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGT 274157 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | || || |||| || | |||||| || ||||| ||||| | || || || || |||| Sbjct 274156 CGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAA 274097 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || || || || ||||| ||||| |||| |||||| || || || Sbjct 274096 AAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAG 274037 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 || | || | ||| | || |||||||||| || || | ||| | ||| | || || | Sbjct 274036 CAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCC 273977 Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594 | || ||||| || | || ||||||||||| |||||||| Sbjct 273976 TCTCCCAGATTTTCCCATCCCTACGGAGAAGATACGATTTCTCTAATGT 273928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468447897510640