Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 268 1e-66
seq1473 188 9e-43
>seq11759
Length=791511
Score = 268 bits (296), Expect = 1e-66
Identities = 497/722 (69%), Gaps = 13/722 (2%)
Strand=Plus/Plus
Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087
||||||||| || ||||| | ||| || || || | ||||||||||| |||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGG--TGGATACAATAAATG 36144
|||||| || | || || ||| || |||| | | || || | |||| ||
Sbjct 466003 GACCGCCTCCCTCATGATGTCATAA-ACCCTTTCCGCCGTAGGCTTGTTGATAATA--TG 466059
Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204
|||||| || | ||||| ||||| ||| || || ||||||| ||| || | || ||
Sbjct 466060 TTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATT 466119
Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264
||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||||
Sbjct 466120 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGA 466179
Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324
||||||||||| | ||||| || || || || || | || | ||| | || ||
Sbjct 466180 ACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGC 466239
Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381
| | || | |||||| | | ||||||||||||||||| ||||| |||| ||
Sbjct 466240 CTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 466299
Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441
| || || ||||| ||| ||| ||| | ||| || || || ||||| ||||
Sbjct 466300 TTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAG 466359
Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501
|||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| |
Sbjct 466360 AAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACG 466419
Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 36559
|||||||| ||| || || || ||||||| ||| | || ||||||||| || ||
Sbjct 466420 AGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATG 466477
Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619
|| ||||||||||| || || ||||| |||| || || | |||| |
Sbjct 466478 CCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTA 466537
Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679
|| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || ||
Sbjct 466538 AGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAG 466597
Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739
|| | || || || || | | ||| || ||||| ||||| || || | | ||| |||
Sbjct 466598 GCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAAT 466657
Query 36740 CT 36741
||
Sbjct 466658 CT 466659
>seq1473
Length=538379
Score = 188 bits (208), Expect = 9e-43
Identities = 366/536 (68%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
||||| ||||| || ||||| |||| |||||| || | || | ||| | | | |
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179
||||| || || ||||| | || | ||| || | ||| |||||| |||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239
|| | || ||||| | | || || |||||||| ||||||||||| | || | ||||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299
||| | || | || | | ||| || | || ||| ||||| |||||||| || | |
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 66300 ATATAGCTTCCACTTGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356
||| | | | ||||| || || | | ||||| |||| || || || || ||
Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209
Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416
|| ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || || ||
Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149
Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476
|| |||| | ||||||||| ||||| || | | || || |||||||| | ||
Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089
Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536
|| || ||||| | ||||| |||||||| | |||||| || ||||||||||| | |||
Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029
Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592
| ||| |||||| |||| | ||| ||||| ||||||| |||||| || ||
Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658064769162040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |