Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11759 268 1e-66 seq1473 188 9e-43 >seq11759 Length=791511 Score = 268 bits (296), Expect = 1e-66 Identities = 497/722 (69%), Gaps = 13/722 (2%) Strand=Plus/Plus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| | ||| || || || | ||||||||||| ||||||| Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGG--TGGATACAATAAATG 36144 |||||| || | || || ||| || |||| | | || || | |||| || Sbjct 466003 GACCGCCTCCCTCATGATGTCATAA-ACCCTTTCCGCCGTAGGCTTGTTGATAATA--TG 466059 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| ||||| ||| || || ||||||| ||| || | || || Sbjct 466060 TTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATT 466119 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 466120 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGA 466179 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||| | ||||| || || || || || | || | ||| | || || Sbjct 466180 ACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGC 466239 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | | || | |||||| | | ||||||||||||||||| ||||| |||| || Sbjct 466240 CTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 466299 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 | || || ||||| ||| ||| ||| | ||| || || || ||||| |||| Sbjct 466300 TTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAG 466359 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| | Sbjct 466360 AAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACG 466419 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 36559 |||||||| ||| || || || ||||||| ||| | || ||||||||| || || Sbjct 466420 AGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATG 466477 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || ||||||||||| || || ||||| |||| || || | |||| | Sbjct 466478 CCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTA 466537 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || Sbjct 466538 AGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAG 466597 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || | || || || || | | ||| || ||||| ||||| || || | | ||| ||| Sbjct 466598 GCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAAT 466657 Query 36740 CT 36741 || Sbjct 466658 CT 466659 >seq1473 Length=538379 Score = 188 bits (208), Expect = 9e-43 Identities = 366/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| || ||||| |||| |||||| || | || | ||| | | | | Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || ||||| | || | ||| || | ||| |||||| ||| Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386 Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 || | || ||||| | | || || |||||||| ||||||||||| | || | |||| Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299 ||| | || | || | | ||| || | || ||| ||||| |||||||| || | | Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266 Query 66300 ATATAGCTTCCACTTGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 ||| | | | ||||| || || | | ||||| |||| || || || || || Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || || || Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149 Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476 || |||| | ||||||||| ||||| || | | || || |||||||| | || Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089 Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536 || || ||||| | ||||| |||||||| | |||||| || ||||||||||| | ||| Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029 Query 66537 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 | ||| |||||| |||| | ||| ||||| ||||||| |||||| || || Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658064769162040