Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 309 4e-79
seq1473 201 2e-46
>seq11759
Length=791511
Score = 309 bits (342), Expect = 4e-79
Identities = 521/748 (70%), Gaps = 11/748 (1%)
Strand=Plus/Plus
Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889
||||||||| || ||||| | ||| || || || | ||||||||||| ||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAA-ATGT 49947
||||| || | || || ||| |||| | | || | | || |||| ||||
Sbjct 466003 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG--ATAATATGT 466060
Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007
||||| || | ||||| ||||| ||| || || ||||||| ||| || || || ||
Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120
Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067
||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||||
Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180
Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127
||||||||||| | ||||| || || || || || || || | ||| | || ||
Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240
Query 50128 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184
| | || | |||||| | | ||||||||||||||||| ||||| |||| ||||
Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300
Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244
| ||||| ||||| ||| ||| ||| | ||| || || || |||||||||| |
Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360
Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304
||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | |
Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420
Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTC 50362
||||||| ||| || || || ||||||| ||| || || ||||||||| || || |
Sbjct 466421 GCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGC 466478
Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422
| ||||||||||| || || ||||| |||| || || || |||| | |
Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538
Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482
| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || |
Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598
Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542
| | || || || || | | ||| || ||||| |||||||| || | | ||| ||||
Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658
Query 50543 TATTTGGATTTGGTGCAAGGATCGGTTC 50570
| ||||| || |||| || |||||
Sbjct 466659 TTCGGGGATTAGGAACAAGTATAGGTTC 466686
>seq1473
Length=538379
Score = 201 bits (222), Expect = 2e-46
Identities = 369/536 (69%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| || ||||| |||| |||||| || | || ||||| | | | | |
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
||||| || || ||||| | || | ||| || | ||| | |||||| |||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118
|| | || ||||| | | || ||||||||||| ||||||||||| | || | ||||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178
||| | || | || | | ||| || | || ||| ||||| |||||||| || | |
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 80179 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235
||| | | | || || || || | | ||||| |||| || || || || ||
Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209
Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295
|| ||||| | ||| ||| |||| | ||| ||||| || ||||| || || || || ||
Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149
Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355
|| |||| | ||||||||| ||||| || | | || || |||||||| | ||
Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089
Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415
|| || ||||| | ||||| |||||||||| |||||| || ||||||||||| | ||
Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029
Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
| ||| |||||| |||| || ||| ||||| ||||||| |||||| || ||
Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718150905154840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |