Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11759 309 4e-79 seq1473 201 2e-46 >seq11759 Length=791511 Score = 309 bits (342), Expect = 4e-79 Identities = 521/748 (70%), Gaps = 11/748 (1%) Strand=Plus/Plus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| | ||| || || || | ||||||||||| |||||| Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAA-ATGT 49947 ||||| || | || || ||| |||| | | || | | || |||| |||| Sbjct 466003 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG--ATAATATGT 466060 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 ||||| || | ||||| ||||| ||| || || ||||||| ||| || || || || Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||||||||||| | ||||| || || || || || || || | ||| | || || Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240 Query 50128 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | | || | |||||| | | ||||||||||||||||| ||||| |||| |||| Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 | ||||| ||||| ||| ||| ||| | ||| || || || |||||||||| | Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 ||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | | Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTC 50362 ||||||| ||| || || || ||||||| ||| || || ||||||||| || || | Sbjct 466421 GCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGC 466478 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 | ||||||||||| || || ||||| |||| || || || |||| | | Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || | Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | | || || || || | | ||| || ||||| |||||||| || | | ||| |||| Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658 Query 50543 TATTTGGATTTGGTGCAAGGATCGGTTC 50570 | ||||| || |||| || ||||| Sbjct 466659 TTCGGGGATTAGGAACAAGTATAGGTTC 466686 >seq1473 Length=538379 Score = 201 bits (222), Expect = 2e-46 Identities = 369/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| || ||||| |||| |||||| || | || ||||| | | | | | Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | || ||||| | | || ||||||||||| ||||||||||| | || | |||| Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 ||| | || | || | | ||| || | || ||| ||||| |||||||| || | | Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266 Query 80179 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 ||| | | | || || || || | | ||||| |||| || || || || || Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || ||||| | ||| ||| |||| | ||| ||||| || ||||| || || || || || Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149 Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355 || |||| | ||||||||| ||||| || | | || || |||||||| | || Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 || || ||||| | ||||| |||||||||| |||||| || ||||||||||| | || Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029 Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718150905154840