Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11759 158 1e-33 >seq11759 Length=791511 Score = 158 bits (174), Expect = 1e-33 Identities = 473/723 (65%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 |||| || ||| |||| ||| ||||| ||| ||||||| ||||||||| || || Sbjct 465899 AGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 465958 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 465959 AGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 466018 Query 13818 ATAATTGTAATAATCTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 13873 || || |||| | | || | | ||| | || | | ||||||||||| | || Sbjct 466019 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGTTTAAAAATAAGGCA 466074 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||||| || ||||| || |||| ||| || || || || ||| || | || Sbjct 466075 TGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCC 466134 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | || || || || | ||| || || | ||||||||| || |||||||||| Sbjct 466135 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATAC 466194 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 || ||||| ||||| ||||| | | || || | | | ||| ||||| || | || Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAAT 466254 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | ||||| || | || || || | | || |||| ||| || ||||| Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314 Query 14114 TAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14170 | | | | | ||| || | |||| | ||| ||||| || || ||| | ||||| Sbjct 466315 CAGAAAGTCGCGTTCCATTGGATCCTTG--ACGTAGGTATCGATCAG-AAGAGAGTACAT 466371 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||||| || |||||||| | || | || | |||||||| || | ||| || | Sbjct 466372 TTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 466431 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| || || |||| | | | |||||||||||| || |||||||| ||||| Sbjct 466432 TTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGC 466491 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || ||||| | | ||| |||| | || ||| || || ||| ||| || Sbjct 466492 GAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTC 466551 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | | |||||| | ||||| ||||| ||||| ||||| ||| || || ||||| || Sbjct 466552 AGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTT 466611 Query 14411 ATA 14413 || Sbjct 466612 GTA 466614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479649258645400