Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 158 1e-33
>seq11759
Length=791511
Score = 158 bits (174), Expect = 1e-33
Identities = 473/723 (65%), Gaps = 14/723 (2%)
Strand=Plus/Plus
Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757
|||| || ||| |||| ||| ||||| ||| ||||||| ||||||||| || ||
Sbjct 465899 AGTAGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 465958
Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817
|| | ||||| | | || | |||||| ||| ||| || ||||| | ||
Sbjct 465959 AGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 466018
Query 13818 ATAATTGTAATAATCTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 13873
|| || |||| | | || | | ||| | || | | ||||||||||| | ||
Sbjct 466019 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATATGTTTAAAAATAAGGCA 466074
Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933
|||||||| || ||||| || |||| ||| || || || || ||| || | ||
Sbjct 466075 TGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCC 466134
Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993
||||| | || || || || | ||| || || | ||||||||| || ||||||||||
Sbjct 466135 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATAC 466194
Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053
|| ||||| ||||| ||||| | | || || | | | ||| ||||| || | ||
Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAAT 466254
Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113
||| | ||||| || | || || || | | || |||| ||| || |||||
Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314
Query 14114 TAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14170
| | | | | ||| || | |||| | ||| ||||| || || ||| | |||||
Sbjct 466315 CAGAAAGTCGCGTTCCATTGGATCCTTG--ACGTAGGTATCGATCAG-AAGAGAGTACAT 466371
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230
|||||| || |||||||| | || | || | |||||||| || | ||| || |
Sbjct 466372 TTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 466431
Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290
||| || || |||| | | | |||||||||||| || |||||||| |||||
Sbjct 466432 TTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGC 466491
Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350
|| || ||||| | | ||| |||| | || ||| || || ||| ||| ||
Sbjct 466492 GAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTC 466551
Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410
| | |||||| | ||||| ||||| ||||| ||||| ||| || || ||||| ||
Sbjct 466552 AGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTT 466611
Query 14411 ATA 14413
||
Sbjct 466612 GTA 466614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479649258645400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |