Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq11759 154 1e-32 >seq11759 Length=791511 Score = 154 bits (170), Expect = 1e-32 Identities = 402/607 (66%), Gaps = 6/607 (1%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 |||||||||||| | || |||||||| || ||||| || |||| ||| || || || Sbjct 466057 ATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTC 466116 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| || | || ||||| | || || || || | ||| || || | ||| || Sbjct 466117 ATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAA 466176 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||||| || ||||| ||||| ||||| | || || || | | | Sbjct 466177 TGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGG 466236 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 ||| ||||| |||| ||||| | ||||| || | || || || | | || Sbjct 466237 TGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 466296 Query 13884 TGTTTCGATTGCATTGAATA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 |||| || || || || | || || | ||| || | |||| | ||| ||||| Sbjct 466297 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTG--ACGTAGGTATCG 466354 Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||| | ||||||||||| || |||||||| | || | || | |||||||| Sbjct 466355 ATCAG-AAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAA 466413 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||| || | ||| ||||| |||| | | | ||||||||||| Sbjct 466414 ACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 466473 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 || |||||||| ||||| || || ||||| | | ||| |||| | || ||| Sbjct 466474 GATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATC 466533 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||| ||| || | | |||||| | ||||| ||||| ||||| ||||| || Sbjct 466534 ATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAA 466593 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 | || || ||||| || || | |||| || || | ||| || || | || || Sbjct 466594 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 466653 Query 14241 AAATCTT 14247 |||||| Sbjct 466654 GAATCTT 466660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478510245630840