Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 284 2e-71
seq1473 201 2e-46
>seq11759
Length=791511
Score = 284 bits (314), Expect = 2e-71
Identities = 519/751 (69%), Gaps = 17/751 (2%)
Strand=Plus/Plus
Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994
||||||||| || ||||| | ||| || || || | ||||||||||| |||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 42050
|||||| || | || || || || | |||| | | || || | |||| |
Sbjct 466003 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATA--T 466058
Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110
||||||| || | ||||| ||||| ||| || || || |||| ||| || | || |
Sbjct 466059 GTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCAT 466118
Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170
| ||| ||||| || ||||| || |||||||| || ||||| || || || |||||||
Sbjct 466119 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATG 466178
Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230
| ||||||||||| | ||||| || || || || || | || | ||| | || |
Sbjct 466179 AACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTG 466238
Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287
| | | || | |||||| | | ||||||||||||||||| ||||| |||| ||
Sbjct 466239 CCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 466298
Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA 42347
||| ||||| ||||| ||| ||| ||| | ||| || || || ||||||||||
Sbjct 466299 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCA 466358
Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407
|||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| |
Sbjct 466359 GAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAAC 466418
Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACTAT 42465
||||||| || || || || ||||||| ||| || || |||||| || || ||
Sbjct 466419 GAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 466476
Query 42466 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525
|| ||||||||||| || || ||||| |||| || || | |||| || |
Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCG-CCATCAT 466535
Query 42526 TAA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584
||| | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || |
Sbjct 466536 TAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAG 466595
Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644
| || | || || || || | | ||| |||||||| ||||| || || | | ||| |
Sbjct 466596 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 466655
Query 42645 ATCTATTTGGATTTGGTGCAAGGATCGGTTC 42675
|||| ||||| || |||| || |||||
Sbjct 466656 ATCTTCGGGGATTAGGAACAAGTATAGGTTC 466686
>seq1473
Length=538379
Score = 201 bits (222), Expect = 2e-46
Identities = 369/536 (69%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| || ||||| |||| |||||| || | || ||||| | | | | |
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
||||| || || ||||| | || | ||| || | ||| | |||||| |||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201
|| | || ||||| | | || || |||||||| ||||||||||| | || | ||||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261
||| | || | || | | ||| || | || ||| ||||| | |||||||| || | |
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 72262 ATATAGCTTCCACTGGCA-CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318
||| | | | || || || || | || ||||| |||| || || || || ||
Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209
Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378
|| ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || || ||
Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149
Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438
|| |||| | ||||||||| ||||| || | | || || |||||||| | ||
Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089
Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498
|| || ||||| | ||||| |||||||||| |||||| || ||||||||||| | ||
Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029
Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
| ||| ||| || |||| || ||| ||||| ||||| | |||||| || ||
Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671029040889560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |