Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11759 178 2e-39 >seq11759 Length=791511 Score = 178 bits (196), Expect = 2e-39 Identities = 390/578 (67%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| || ||||| |||||||| | ||||| || || ||||| || |||||| Sbjct 466644 CCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACG 466585 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || || ||||| | ||||| || || ||||| | | | | ||| Sbjct 466584 GTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGACTGGGAAAGCCTT---AATGATGGC 466528 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 || || | || || ||| | | ||||| ||||| || | | ||||| ||||| || Sbjct 466527 GAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCAGCCAGTGATGGCATCGTTAAT 466468 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || ||||| |||| || | | | ||| | ||||| |||| |||| | || Sbjct 466467 GAAAATCTAACTTTGAAT---TTTTGTAACGAGGTTCAAATTCCCGAGGC-TCGTTGTTT 466412 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| ||| | ||| || | || ||| | || || |||||||||||| ||||| || Sbjct 466411 TTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATGTACTCTCTTCTGATCGA 466352 Query 125297 CATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACGGTG 125354 | ||| | ||||| || | || || | || |||||||| || | ||| || Sbjct 466351 TACCTACGTCAAGGATCC--AATGGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTG 466294 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 |||| | | ||| ||||| | |||| | || ||||||| | | | ||| | | Sbjct 466293 CCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGCACCC 466234 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 |||||||| | |||||||| ||||| ||||| || ||| | |||||||| ||| ||| Sbjct 466233 TACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTT 466174 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || |||| || |||||||||||||| || |||||||| || || || ||||| ||| Sbjct 466173 GCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAATGAG 466114 Query 125535 TTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || ||||||||| ||||| ||| || ||||| Sbjct 466113 CTGATCAGTCGAGACGAAGGCCTCCACACGGATTTTGC 466076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740937564395560