Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1039 100 2e-16 seq7000 84.2 1e-11 >seq1039 Length=57342 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||| ||||||| | | || || Sbjct 42889 CACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTC 42948 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| || ||| || | ||||||||||||| || ||||| || || || Sbjct 42949 CAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 43008 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| | || || | | ||| |||||| |||||| || ||||| || || ||||| Sbjct 43009 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTT 43068 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||||||||| Sbjct 43069 GCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | || || | ||||||||||| || ||||| ||||| || ||||| || || Sbjct 49600 ACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGA 49541 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || ||||| ||||| ||| ||| || || ||||| ||||| | || Sbjct 49540 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGG 49481 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| || || || |||| ||| || || | | |||| ||| | || | Sbjct 49480 AATGCCCTCCTTGTCTTGAATCTTTGCC---TTCACATTCTCTATCGAGTCACTCGGCTC 49424 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || || || || || || || ||||| ||||||||| Sbjct 49423 CACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || || || ||||| || ||||| |||||||| | | || || Sbjct 31545 CACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTC 31604 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| |||||||| ||| || | ||||||||||| | || |||||||| || || Sbjct 31605 CAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 31664 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| | || || | | |||| || |||| | || ||||| || || ||||| Sbjct 31665 AATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTT 31724 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || ||||| Sbjct 31725 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754 >seq7000 Length=1252665 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct 319607 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 319666 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 ||| || | ||| || ||||| | || || || || || || |||| |||| Sbjct 319667 GCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCT-- 319724 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || | | ||| | ||| |||| || || ||||| || ||||| || |||||| Sbjct 319725 -TCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 319783 Query 33350 GTTTTTACGAAAATTTGCATG 33370 ||||| || ||||| |||||| Sbjct 319784 GTTTTCACAAAAATCTGCATG 319804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318726584725638