Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 100 2e-16
seq7000 84.2 1e-11
>seq1039
Length=57342
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||| | ||| | || ||||| ||||| || ||||| ||||||| | | || ||
Sbjct 42889 CACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTC 42948
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||| ||||| || ||| || | ||||||||||||| || ||||| || || ||
Sbjct 42949 CAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 43008
Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339
|||| | || || | | ||| |||||| |||||| || ||||| || || |||||
Sbjct 43009 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTT 43068
Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || || |||||||||||
Sbjct 43069 GCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 91.5 bits (100), Expect = 9e-14
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
|||||| | || || | ||||||||||| || ||||| ||||| || ||||| || ||
Sbjct 49600 ACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGA 49541
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || | || ||||| ||||| ||| ||| || || ||||| ||||| | ||
Sbjct 49540 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGG 49481
Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
||||| || || || |||| ||| || || | | |||| ||| | || |
Sbjct 49480 AATGCCCTCCTTGTCTTGAATCTTTGCC---TTCACATTCTCTATCGAGTCACTCGGCTC 49424
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||| || || || || || || || || || ||||| |||||||||
Sbjct 49423 CACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||| | ||| | || || || ||||| || ||||| |||||||| | | || ||
Sbjct 31545 CACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTC 31604
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||| |||||||| ||| || | ||||||||||| | || |||||||| || ||
Sbjct 31605 CAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 31664
Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339
|||| | || || | | |||| || |||| | || ||||| || || |||||
Sbjct 31665 AATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTT 31724
Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || ||||| || |||||
Sbjct 31725 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
>seq7000
Length=1252665
Score = 84.2 bits (92), Expect = 1e-11
Identities = 140/201 (70%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| ||||| || || |||||||||||||| || || || ||||||||||| |||
Sbjct 319607 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 319666
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289
||| || | ||| || ||||| | || || || || || || |||| ||||
Sbjct 319667 GCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCT-- 319724
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
| || | | ||| | ||| |||| || || ||||| || ||||| || ||||||
Sbjct 319725 -TCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 319783
Query 33350 GTTTTTACGAAAATTTGCATG 33370
||||| || ||||| ||||||
Sbjct 319784 GTTTTCACAAAAATCTGCATG 319804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318726584725638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |