Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 91.5 1e-13
>seq1039
Length=57342
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||| | ||| || ||| || ||||| || || || || ||| ||| |||| ||
Sbjct 31545 CACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTC 31604
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| || ||||| ||||| |||| ||||||||||| | || | ||||| ||||||
Sbjct 31605 CAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 31664
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||| || || || | | | | ||| |||||||| || | || ||||||||
Sbjct 31665 AATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTT 31724
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||| ||||||||| || || |||||
Sbjct 31725 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| || || || ||||| || | |||||||||||| | || | || || |
Sbjct 42942 CATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCT 43001
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| ||| || || || | ||| || || || ||||| || | ||| |
Sbjct 43002 TGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGA 43061
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||| ||||||| |||||||||||| ||||||||
Sbjct 43062 TTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||||||| || || ||| |||||||| || || ||| | || |||| ||
Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| || || || ||||| ||||| ||||| ||||| | || | || || || |||
Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||| ||| || || | | | | || ||||||||| || | |||||| || ||
Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 49403
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || | |||||||| ||||||||||||
Sbjct 49402 CCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354720823499388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |