Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq11759 154 1e-32 >seq11759 Length=791511 Score = 154 bits (170), Expect = 1e-32 Identities = 407/615 (66%), Gaps = 5/615 (1%) Strand=Plus/Plus Query 13128 TTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTT 13186 |||||| ||| ||||| || | ||||||||||| ||| | ||||| |||| ||| Sbjct 466049 TTGATAATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTG 466108 Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246 || ||||| || ||| || || || ||||| || || || || || | ||| || || Sbjct 466109 ATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATG 466168 Query 13247 GCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCA 13306 | |||||| ||||| ||||| |||| |||||||| || || ||||| | || | || Sbjct 466169 GAAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCG 466228 Query 13307 CCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG 13366 | || | |||||| | | |||||| | ||||| | || || | ||| Sbjct 466229 GCGTAGGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACA 466288 Query 13367 CAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAA 13426 || || ||| || |||||||| | | | | |||| | || | || Sbjct 466289 CACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAG 466348 Query 13427 GTATCTATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACC 13485 ||||| ||| | ||| | |||||||| |||||||| ||||| | || | ||| | || Sbjct 466349 GTATCGATC-AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCC 466407 Query 13486 ATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTC 13545 ||||||||| | |||||| | | ||||| ||| |||| | | || ||||| Sbjct 466408 ATAAAAACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTC 466467 Query 13546 GTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 ||||| || || ||||| || || || ||||| | | | | ||| || | ||| Sbjct 466468 ATTAACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTC 466527 Query 13606 GTTTTC-TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGG 13664 | || | | |||| ||| || | | ||| || | || ||| || |||||||| | Sbjct 466528 GCCATCATTAAGGCTTT-CCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCG 466586 Query 13665 TCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAA 13724 |||| ||||| ||||| || ||||| || | | ||| ||||| | || ||||| | Sbjct 466587 TCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCA 466646 Query 13725 ACACAACGTATCTTC 13739 ||||||| |||||| Sbjct 466647 TCACAACGAATCTTC 466661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430913428135662