Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7336 156 1e-32 seq7000 141 2e-28 seq1039 140 7e-28 >seq7336 Length=62802 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 || || || |||| ||| || || || ||||| | ||| || || || |||||||||||| Sbjct 18541 TTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAG 18600 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || || || || | ||||| |||| || || || || || || |||| |||||||| Sbjct 18601 TCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCT 18660 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || |||||||| ||||| || || || ||||||||||| || || | || ||| || || Sbjct 18661 GGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCACTTGGC 18720 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || ||||| || || || ||||| || |||||| Sbjct 18721 TCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq7000 Length=1252665 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| || ||||||| | | || || Sbjct 319591 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATC 319650 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || ||||||||||| || | |||||| || || || || || || || || Sbjct 319651 CTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTC 319710 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | | |||| |||||| ||||| || || ||||| Sbjct 319711 CTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGT 319770 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| |||||||| Sbjct 319771 TTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 >seq1039 Length=57342 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || || || | || ||||| ||||| || || || ||||| Sbjct 41504 CCCCCACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 41563 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | ||| ||||| | || || |||||||| || | | ||||| || || || Sbjct 41564 AGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 41623 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || |||||||| || || ||||| |||| | || || || || ||| Sbjct 41624 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 41683 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||||||||| ||||| || || || |||||||||||||| Sbjct 41684 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || ||||| ||||||||||| ||||| | |||||| Sbjct 42658 AAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTC 42717 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || ||||| || || | | ||||||||| || || || || || ||||| Sbjct 42718 TTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATC 42777 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || |||||||| || | | ||| || ||||| || || || || || || Sbjct 42778 CTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGT 42837 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| || ||||| Sbjct 42838 CTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | ||| | ||| || | ||| | || || || || ||||| || ||||| || Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||| ||||| | || || |||||||| || | | ||||| || || || Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || ||||||||||| || ||||| |||| | || || || || ||| Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||||||||| ||||| || || || || ||||| ||||| Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | || | ||| || ||||| || ||||| Sbjct 41762 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 41821 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || || || || || || ||||| || || Sbjct 41822 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 41881 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| | || || || || ||||| || ||||||||||| ||||| || || Sbjct 41882 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTC 41941 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 41942 TTCACAAATATCTGCAT 41958 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | || | ||| || ||||| || ||||| Sbjct 41990 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 42049 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || || || || || || ||||| || || Sbjct 42050 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 42109 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| | || || || || ||||| || ||||||||||| ||||| || || Sbjct 42110 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTC 42169 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 42170 TTCACAAATATCTGCAT 42186 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | || | ||| || ||||| || ||||| Sbjct 42218 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 42277 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || || || || || || ||||| || || Sbjct 42278 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 42337 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| | || || || || ||||| || ||||||||||| ||||| || || Sbjct 42338 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTC 42397 Query 104543 TTTACAAATATCTGCAT 104559 || || ||||| ||||| Sbjct 42398 TTCACGAATATTTGCAT 42414 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || ||||| | || | ||| || || || || ||||| Sbjct 42446 GTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCCAGCTGCTTTCCT 42505 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | || || || || || || || || ||||| || ||||| || || Sbjct 42506 GCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTC 42565 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | || || ||||| ||||| || ||| Sbjct 42566 ACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTT 42625 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 42626 TTAACAAATATCTGCAT 42642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151204687653748