Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 156 1e-32
seq7000 141 2e-28
seq1039 140 7e-28
>seq7336
Length=62802
Score = 156 bits (172), Expect = 1e-32
Identities = 175/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386
|| || || |||| ||| || || || ||||| | ||| || || || ||||||||||||
Sbjct 18541 TTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAG 18600
Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446
|| || || || | ||||| |||| || || || || || || |||| ||||||||
Sbjct 18601 TCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCT 18660
Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506
|| |||||||| ||||| || || || ||||||||||| || || | || ||| || ||
Sbjct 18661 GGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCACTTGGC 18720
Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| || || || || || ||||| || || || ||||| || ||||||
Sbjct 18721 TCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774
>seq7000
Length=1252665
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||||||||| || ||||||| | | || ||
Sbjct 319591 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATC 319650
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | ||| || ||||||||||| || | |||||| || || || || || || || ||
Sbjct 319651 CTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTC 319710
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| || || ||||| || | | |||| |||||| ||||| || || |||||
Sbjct 319711 CTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGT 319770
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||| ||||| ||||| ||||||||
Sbjct 319771 TTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803
>seq1039
Length=57342
Score = 140 bits (154), Expect = 7e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
||||| | || | ||| || || || | || ||||| ||||| || || || |||||
Sbjct 41504 CCCCCACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 41563
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
||||| | ||| ||||| | || || |||||||| || | | ||||| || || ||
Sbjct 41564 AGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 41623
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| || || || || |||||||| || || ||||| |||| | || || || || |||
Sbjct 41624 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 41683
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||||||||| ||||| || || || ||||||||||||||
Sbjct 41684 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || || ||||| ||||||||||| ||||| | ||||||
Sbjct 42658 AAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTC 42717
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | || || ||||| || || | | ||||||||| || || || || || |||||
Sbjct 42718 TTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATC 42777
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || |||||||| || | | ||| || ||||| || || || || || ||
Sbjct 42778 CTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGT 42837
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || || || ||||| || |||||
Sbjct 42838 CTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || | ||| | ||| || | ||| | || || || || ||||| || ||||| ||
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
|| || | ||| ||||| | || || |||||||| || | | ||||| || || ||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| || || || || ||||||||||| || ||||| |||| | || || || || |||
Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||||||||| ||||| || || || || ||||| |||||
Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || | || | ||| || ||||| || |||||
Sbjct 41762 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 41821
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | || || || || || || || || || || || ||||| || ||
Sbjct 41822 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 41881
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| |||| | || || || || ||||| || ||||||||||| ||||| || ||
Sbjct 41882 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTC 41941
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||||||||||||
Sbjct 41942 TTCACAAATATCTGCAT 41958
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || | || | ||| || ||||| || |||||
Sbjct 41990 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 42049
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | || || || || || || || || || || || ||||| || ||
Sbjct 42050 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 42109
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| |||| | || || || || ||||| || ||||||||||| ||||| || ||
Sbjct 42110 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTC 42169
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||||||||||||
Sbjct 42170 TTCACAAATATCTGCAT 42186
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || | || | ||| || ||||| || |||||
Sbjct 42218 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGCTTTCCT 42277
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | || || || || || || || || || || || ||||| || ||
Sbjct 42278 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 42337
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| |||| | || || || || ||||| || ||||||||||| ||||| || ||
Sbjct 42338 ACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTC 42397
Query 104543 TTTACAAATATCTGCAT 104559
|| || ||||| |||||
Sbjct 42398 TTCACGAATATTTGCAT 42414
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || || ||||| | || | ||| || || || || |||||
Sbjct 42446 GTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCCAGCTGCTTTCCT 42505
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| | | || || || || || || || || ||||| || ||||| || ||
Sbjct 42506 GCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTC 42565
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || |||| | || || || || ||||| | || || ||||| ||||| || |||
Sbjct 42566 ACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTT 42625
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||||||||||||
Sbjct 42626 TTAACAAATATCTGCAT 42642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151204687653748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |