Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7000 91.5 1e-13 seq1039 89.7 4e-13 >seq7000 Length=1252665 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||| |||||||||| || || | ||||||| ||| Sbjct 319601 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 319660 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | |||||| || || ||| | | ||||||||| ||| || Sbjct 319661 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTA 319720 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || | ||||| || || ||| | || || ||||| ||||| Sbjct 319721 GCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTA 319780 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||||||||||||| Sbjct 319781 AGAGTTTTCACAAAAATCTGCAT 319803 >seq1039 Length=57342 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | | ||| || ||||| || |||||| |||||||||||||||| | Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | |||||||||||||| || || |||| || || ||||| || || Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| || || ||| ||| | | |||| | || | | |||| | Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 42595 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 42596 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || |||||||||||||||||| |||| || || | || || Sbjct 42889 CACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTC 42948 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | || ||||| ||| || | | |||||||| Sbjct 42949 CAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 43008 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||| | | | | || || ||| | | ||| ||| | || || ||||| Sbjct 43009 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTT 43068 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| ||||| ||||||||||| |||||||| Sbjct 43069 GCCGGTTAGAGTCTTCACAAAAATTTGCATCGT 43101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421183785459131