Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1039 113 4e-20 seq7336 89.7 5e-13 seq7000 87.8 2e-12 seq7187 84.2 2e-11 >seq1039 Length=57342 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| |||| ||||||||| | || || ||||| || | ||| | Sbjct 42408 TTTGCATGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGT 42467 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| || ||| |||||||||||| ||||| | || || |||| |||||| | Sbjct 42468 AATCAGACAAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGT 42527 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| || || || || | || || ||||| ||| | | | |||| | | Sbjct 42528 CTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCA-CTT 42586 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 42587 GGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||||||||| | ||| || || || ||| || ||| |||| ||| |||| Sbjct 31558 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 31615 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | | |||||| ||||| ||||| ||||| || || | ||| || |||| Sbjct 31616 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTCGCCT 31675 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | | ||| | | || || || | ||||| ||||| || || |||| Sbjct 31676 TCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAG 31735 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| ||||||||||| Sbjct 31736 TCTTCACGAAGATCTGCAT 31754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||||||||| | ||| || || || ||| || ||| |||| ||| |||| Sbjct 32014 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 32071 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | | |||||| ||||| ||||| || || ||||| | ||| || |||| Sbjct 32072 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCT 32131 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | | ||| | | || || || | ||||| ||||| ||||| | | Sbjct 32132 TCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTTTTGCCAGTCAACG 32191 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| ||||||||||| Sbjct 32192 TCTTCACGAAGATCTGCAT 32210 >seq7336 Length=62802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| | ||| || ||| | ||||| | | ||| |||||||| || || || |||||| Sbjct 18619 TCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTG 18678 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||||||| || ||| ||| | ||| | ||| || || |||| || || Sbjct 18679 TCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCA-CTTGGCTCAACCTCAAGGGTTAT 18737 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| ||||| || ||||| || ||||| Sbjct 18738 GGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 18773 >seq7000 Length=1252665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || |||| || | | || || ||||| ||||| || || || Sbjct 319648 ATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTT 319707 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || || | | ||||| |||| ||||| Sbjct 319708 GTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGAT 319767 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||||||||||||||| |||||||||| Sbjct 319768 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATGC 319805 >seq7187 Length=4100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||||||||| | ||| || || || ||| || ||| |||| ||| |||| Sbjct 646 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 703 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | | |||||| ||||| ||||| || || ||||| | ||| || |||| Sbjct 704 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCT 763 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | | ||| | | || || || | ||||| ||||| ||||| | | Sbjct 764 TCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTTTTGCCAGTCAACG 823 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| ||||||||||| Sbjct 824 TCTTCACGAAGATCTGCAT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448217618603160