Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 113 4e-20
seq7336 89.7 5e-13
seq7000 87.8 2e-12
seq7187 84.2 2e-11
>seq1039
Length=57342
Score = 113 bits (124), Expect = 4e-20
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || || | ||| |||| ||||||||| | || || ||||| || | ||| |
Sbjct 42408 TTTGCATGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGT 42467
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
|||| || ||| |||||||||||| ||||| | || || |||| |||||| |
Sbjct 42468 AATCAGACAAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGT 42527
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||| ||||| || || || || | || || ||||| ||| | | | |||| | |
Sbjct 42528 CTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCA-CTT 42586
Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || | |||||||| || ||||| || ||||| ||||| ||||||||
Sbjct 42587 GGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| ||||||||||| | ||| || || || ||| || ||| |||| ||| ||||
Sbjct 31558 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 31615
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| ||||||| | | |||||| ||||| ||||| ||||| || || | ||| || ||||
Sbjct 31616 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTCGCCT 31675
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | | | ||| | | || || || | ||||| ||||| || || ||||
Sbjct 31676 TCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAG 31735
Query 94989 TTTTCACAAAGATCTGCAT 95007
| ||||| |||||||||||
Sbjct 31736 TCTTCACGAAGATCTGCAT 31754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| ||||||||||| | ||| || || || ||| || ||| |||| ||| ||||
Sbjct 32014 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 32071
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| ||||||| | | |||||| ||||| ||||| || || ||||| | ||| || ||||
Sbjct 32072 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCT 32131
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | | | ||| | | || || || | ||||| ||||| ||||| | |
Sbjct 32132 TCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTTTTGCCAGTCAACG 32191
Query 94989 TTTTCACAAAGATCTGCAT 95007
| ||||| |||||||||||
Sbjct 32192 TCTTCACGAAGATCTGCAT 32210
>seq7336
Length=62802
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| | ||| || ||| | ||||| | | ||| |||||||| || || || ||||||
Sbjct 18619 TCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTG 18678
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971
|| | |||||||| || ||| ||| | ||| | ||| || || |||| || ||
Sbjct 18679 TCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCA-CTTGGCTCAACCTCAAGGGTTAT 18737
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||||||| ||||| || ||||| || |||||
Sbjct 18738 GGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 18773
>seq7000
Length=1252665
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||| || || || |||| || | | || || ||||| ||||| || || ||
Sbjct 319648 ATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTT 319707
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||| || ||||| || | | || || | | ||||| |||| |||||
Sbjct 319708 GTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGAT 319767
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| || ||||||||||||||||| ||||||||||
Sbjct 319768 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATGC 319805
>seq7187
Length=4100
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| ||||||||||| | ||| || || || ||| || ||| |||| ||| ||||
Sbjct 646 GTGGATTCCTTTTGGATGTTGTAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTTC 703
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| ||||||| | | |||||| ||||| ||||| || || ||||| | ||| || ||||
Sbjct 704 CCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCT 763
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | | | ||| | | || || || | ||||| ||||| ||||| | |
Sbjct 764 TCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTTTTGCCAGTCAACG 823
Query 94989 TTTTCACAAAGATCTGCAT 95007
| ||||| |||||||||||
Sbjct 824 TCTTCACGAAGATCTGCAT 842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448217618603160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |