Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4043 168 1e-37 seq8051 136 6e-28 seq8402 120 5e-23 >seq4043 Length=602373 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| |||||||| || ||||| |||||||||||||| || |||||||| Sbjct 255934 TCTTCGCGATAACATTCAAGGAATAACTAAGCCCGCTATCCGTCGTCTTGCGCGTCGTGG 255993 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| | ||||| | |||| || |||| |||| ||| | || |||| Sbjct 255994 AGGTGTGAAGCGTATTTCTGGCCTTATCTACGAGGAGACCCGTGGTGTACTAAAAGTCTT 256053 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| |||||| | ||||||| || |||||||| ||||| ||||| ||||| || Sbjct 256054 CTTGGAGAACGTTATACGTGATGCTGTCACATATACCGAACACGCCAAACGCAAGACCGT 256113 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || |||| || || || || | | | || || ||||| Sbjct 256114 CACAGCCATGGACGTAGTTTACGCTCTGAAGCGCCAGGGTCGCACGCTCTACGGCTTTGG 256173 Query 16693 AAGTTA 16698 |||| Sbjct 256174 TGGTTA 256179 >seq8051 Length=39876 Score = 136 bits (150), Expect = 6e-28 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 25248 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCGCGTCGTGGT 25189 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 25188 GGAGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 25129 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | || ||| || || || |||||||| || | ||||| ||| Sbjct 25128 CTGGAGAACGTCATTCGCGACGCTGTCACGTACACGGAGCACGCGAAGAGGAAGACCGTC 25069 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || | ||||| | || ||||| |||| ||||| || |||| Sbjct 25068 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTA 25026 >seq8402 Length=679 Score = 120 bits (132), Expect = 5e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| |||||||||||| Sbjct 358 CGTGACAATATTCAGGGCATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGA 299 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| ||||||| || | ||| | ||| | || || Sbjct 298 GTGAAACGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 239 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | |||||| || || || |||||||| || || ||||| |||||| Sbjct 238 GAGAACGTAATTCGCGATGCTGTCACGTACACTGAGCACGCAAAGCGCAAGACCGTCACC 179 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || || || || |||| | ||||| || || Sbjct 178 GCAATGGACGTGGTGTATGCCCTCAAGCGCCAGGGTCGTACTCTGTATGGCTTCGG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063194234783