Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4043 168 1e-37
seq8051 136 6e-28
seq8402 120 5e-23
>seq4043
Length=602373
Score = 168 bits (186), Expect = 1e-37
Identities = 185/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||| |||||||| || ||||| |||||||||||||| || ||||||||
Sbjct 255934 TCTTCGCGATAACATTCAAGGAATAACTAAGCCCGCTATCCGTCGTCTTGCGCGTCGTGG 255993
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || |||||| | ||||| | |||| || |||| |||| ||| | || ||||
Sbjct 255994 AGGTGTGAAGCGTATTTCTGGCCTTATCTACGAGGAGACCCGTGGTGTACTAAAAGTCTT 256053
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | ||| |||||| | ||||||| || |||||||| ||||| ||||| ||||| ||
Sbjct 256054 CTTGGAGAACGTTATACGTGATGCTGTCACATATACCGAACACGCCAAACGCAAGACCGT 256113
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| ||||||| | || || || |||| || || || || | | | || || |||||
Sbjct 256114 CACAGCCATGGACGTAGTTTACGCTCTGAAGCGCCAGGGTCGCACGCTCTACGGCTTTGG 256173
Query 16693 AAGTTA 16698
||||
Sbjct 256174 TGGTTA 256179
>seq8051
Length=39876
Score = 136 bits (150), Expect = 6e-28
Identities = 164/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || || || ||||| || || || |||||||| |||||||||
Sbjct 25248 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCGCGTCGTGGT 25189
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||||| ||||||| | |||| || |||| ||||| ||| | ||| | |||
Sbjct 25188 GGAGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 25129
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| || | || ||| || || || |||||||| || | ||||| |||
Sbjct 25128 CTGGAGAACGTCATTCGCGACGCTGTCACGTACACGGAGCACGCGAAGAGGAAGACCGTC 25069
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676
|| | ||||| | || ||||| |||| ||||| || ||||
Sbjct 25068 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTA 25026
>seq8402
Length=679
Score = 120 bits (132), Expect = 5e-23
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || || || || || ||||| ||||| || || || || ||||| ||||||||||||
Sbjct 358 CGTGACAATATTCAGGGCATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGA 299
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || ||||||| | |||| ||||||| || | ||| | ||| | || ||
Sbjct 298 GTGAAACGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 239
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| || | |||||| || || || |||||||| || || ||||| ||||||
Sbjct 238 GAGAACGTAATTCGCGATGCTGTCACGTACACTGAGCACGCAAAGCGCAAGACCGTCACC 179
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||| | || ||||| | || || || || |||| | ||||| || ||
Sbjct 178 GCAATGGACGTGGTGTATGCCCTCAAGCGCCAGGGTCGTACTCTGTATGGCTTCGG 123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79063194234783
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |